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All Biomedical & Clinical Articles (Page 59)

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Published Research Papers

Showing 24 of 1542 peer-reviewed translated articles (Page 59 of 65)

TMEM16A inhibition suppresses melanoma metastasisGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

TMEM16A inhibition suppresses melanoma metastasis

As a highly aggressive malignancy arising from melanocytes, malignant melanoma accounts for the majority of skin cancer-related deaths worldwide. Metastases, particularly lung and brain metastases, contribute significantly to mortality. Although targeted therapy (BRAF/MEK inhibitors) and immunotherapy (checkpoint inhibitors) have greatly improved the overall survival of patients, drug resistance and toxicity remain major clinical challenges. Therefore, exploring new approaches to combat melanoma metastasis is imperative. Melanoma metastasis involves multiple processes, including phenotype switching (epithelial-mesenchymal transition, EMT), migration, invasion and infiltration. Phenotype switching occurs at the early stage of metastasis and is characterized by the downregulation of epithelial markers (e.g., E-cadherin) and the upregulation of mesenchymal markers (e.g., N-cadherin and Vimentin). Metastasis depends on highly regulated and complex remodeling of the tumor microenvironment formed by cells as well as by biochemical and biophysical components of the extracellular matrix (ECM) and their intricate interactions within and around a solid tumor mass. These processes are primarily mediated by the altered expression of metastasis-associated genes, and targeting the expression of these genes may be a promising strategy for inhibiting melanoma metastasis. TMEM16A (also known as ANO1), a calcium-activated chloride channel (CaCC) localized to the plasma membrane and organelle membranes, is widely expressed in tissues such as airways, smooth muscles, and neurons, where it plays important physiological roles in regulating smooth muscle contraction and chloride ion secretion. Growing evidence indicates that TMEM16A is overexpressed in various cancers and contributes to tumor progression by increasing cell proliferation, invasion, and metastasis. The expression level of TMEM16A is closely related to tumor size and differentiation, is associated with advanced stage and poor prognosis, and can even be used as a biomarker for certain malignant tumors. We previously observed a high expression level of TMEM16A in a human melanoma cell line, A375, which harbors a BRAF V600E mutation, and demonstrated its role in promoting tumor growth. Here, we further showed that elevated TMEM16A expression contributes to melanoma metastasis.

Read Full Abstract10.3724/abbs.2025133
GALNT7 promotes hepatocellular carcinoma progression by activating the PI3K/AKT signaling pathway via O-glycosylation of MUC13Graphical AbstractVerified
Acta Biochimica et Biophysica Sinica

GALNT7 promotes hepatocellular carcinoma progression by activating the PI3K/AKT signaling pathway via O-glycosylation of MUC13

Hepatocellular carcinoma (HCC) represents a significant global health challenge due to its aggressive malignancy. Abnormal glycosylation is a frequent phenomenon in tumor cells and manifests as alterations in key cancer biomarkers. This phenomenon is driven primarily by changes in the expressions of glycosyltransferases. Our study focuses on GALNT7, a member of the GALNT glycosyltransferase family, which catalyzes the initiation of O-linked glycan synthesis by transferring N-acetylgalactosamine (GalNAc) to serine or threonine residues on target proteins. We observe that GALNT7 expression is notably increased in HCC tissues and is correlated with increased tumor cell invasion, migration, and proliferation, alongside with reduced apoptosis, both in vivo and in vitro. Further molecular analyses indicate that GALNT7 specifically modifies the O-glycosylation pattern of MUC13, thereby influencing the activation of the PI3K/AKT signaling pathway. Additionally, elevated GALNT7 level enhances resistance to lenvatinib-based chemotherapy regimens. Thus, GALNT7 is a critical regulator of oncogenic processes in HCC. Targeting the GALNT7-MUC13-PI3K/AKT axis represents a novel therapeutic strategy for combating HCC.

Read Full Abstract10.3724/abbs.2025117
Corrigendum to: Excessive ER-phagy mediated by FAM134B contributes to trophoblast cell mitochondrial dysfunction in preeclampsiaGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

Corrigendum to: Excessive ER-phagy mediated by FAM134B contributes to trophoblast cell mitochondrial dysfunction in preeclampsia

In the version of this article initially published, an error was found in Figure 1A. The correct figure is as follows, and the correction does not significantly impact the overall findings and conclusions of the paper. The authors apologize for this error and any confusion it may have caused.

Read Full Abstract10.3724/abbs.2025001
Breakthrough in Komagataella phaffii cell-free protein synthesis: AOX1 promoter drives T7-independent expression efficientlyGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

Breakthrough in Komagataella phaffii cell-free protein synthesis: AOX1 promoter drives T7-independent expression efficiently

This study develops a cell-free protein synthesis (CFPS) system based on the endogenous alcohol oxidase 1 promoter in Komagataella phaffii. The system avoids the dependence of the T7 promoter, thus eliminating the cost issues associated with the T7 RNA polymerase-dependent system in traditional CFPS systems. By integrating an alcohol oxidase 1 promoter-driven GFP expression cassette with optimized K. phaffii cell extract, key components are optimized via a one-factor-at-a-time experiment and a deterministic screening design. This study demonstrates that potassium glutamate and magnesium glutamate have a significant synergistic effect on this system. After optimization, the system achieves a GFP yield of 596.0 mg/L, providing a new record for GFP expression in K. phaffii CFPS systems. This work provides an important theoretical foundation for the further development of T7-independent K. phaffii CFPS systems and their potential applications in scalable bioproduction.

Read Full Abstract10.3724/abbs.2025115
Structure-based insights into fluorogenic RNA aptamersGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

Structure-based insights into fluorogenic RNA aptamers

Fluorogenic RNA aptamers are in vitro-selected RNA molecules capable of binding to specific fluorophores, significantly increasing their intrinsic fluorescence. Over the past decade, the color palette of fluorescent RNA aptamers has greatly expanded. The emergence and development of these fluorogenic RNA aptamers has introduced a powerful approach for visualizing RNA localization and transport with high spatiotemporal resolution in live cells. To date, a variety of tertiary structures of fluorogenic RNA aptamers have been determined using X-ray crystallography or NMR spectroscopy. Many of these fluorogenic RNA aptamers feature base quadruples or base triples in their fluorophore-binding sites. This review summarizes the structure-based investigations of fluorogenic RNA aptamers, with a focus on their overall folds, ligand-binding pockets and fluorescence activation mechanisms. Additionally, the exploration of how structures guide rational optimization to enhance RNA visualization techniques is discussed.

Read Full Abstract10.3724/abbs.2024142
The Role of lncRNA m6A Modifications in Tumor Proliferation, Apoptosis, Migration, Invasion, Metastasis, and Therapeutic ResistanceGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

The Role of lncRNA m6A Modifications in Tumor Proliferation, Apoptosis, Migration, Invasion, Metastasis, and Therapeutic Resistance

Long non-coding RNAs (lncRNAs) are emerging as critical regulators of gene expression and cellular processes, and their N6-methyladenosine (m6A) modifications have been implicated in various cancers. This review synthesizes current knowledge on the functional roles of lncRNA m6A modifications in tumor proliferation, apoptosis, migration, invasion, metastasis, and therapeutic resistance. We discuss the molecular mechanisms by which m6A-modified lncRNAs influence cancer progression and highlight potential clinical applications. Understanding these pathways may pave the way for novel diagnostic and therapeutic strategies.

Read Full Abstract10.3724/abbs.2025134
Cellular functions and biomedical applications of circular RNAsGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

Cellular functions and biomedical applications of circular RNAs

Circular RNAs (circRNAs) have emerged as a large class of stable and conserved RNAs that are derived primarily from back-splicing of pre-mRNAs and expressed in a cell- and tissue-specific fashion. Recent studies have indicated that a subset of circRNAs may undergo translation through cap-independent pathways mediated by internal ribosome entry sites (IRESs), m6A modifications, or IRES-like short elements. Considering the stability and low immunogenicity of circRNAs, in vitro transcribed circRNAs hold great promise in biomedical applications. In this review, we briefly discuss the noncoding and coding functions of circRNAs in cells, as well as the methods for the in vitro synthesis of circRNAs and current advances in the applications of circRNAs in biomedicine.

Read Full Abstract10.3724/abbs.2024241
Therapeutic potential of targeting the NEDD4L-eEF1A1 axis in cancer therapyGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

Therapeutic potential of targeting the NEDD4L-eEF1A1 axis in cancer therapy

Abnormal proliferation and migration of endothelial cells are key contributors to tumor angiogenesis. Recent studies have shown that the crucial role of E3 ubiquitin ligase neuronal precursor cell expression developmentally downregulated 4-like (NEDD4L) in tumorigenesis. However, the precise mechanisms by which NEDD4L functions in endothelial cells remain unclear. In this study, we investigate the mechanisms by which NEDD4L influences the function of human umbilical vein endothelial cells (HUVECs) and its effect on tumor angiogenesis. Our results show that NEDD4L overexpression in HUVECs suppresses both cell proliferation and migration. Additionally, we find that the autophagic activity in NEDD4L-overexpressing cells is increased. Proteomic profiling and ubiquitination assays reveal that NEDD4L interacts with eEF1A1, promoting K48-linked ubiquitination-mediated degradation of eEF1A1. This post-translational modification is a key step in the NEDD4L-mediated regulation of autophagy and cellular function. Moreover, we find that loss of endothelial NEDD4L significantly enhances tumor growth and promotes angiogenesis in vivo. Overall, NEDD4L plays a crucial role in inhibiting tumor angiogenesis by regulating eEF1A1 ubiquitination and degradation, providing new insights into the NEDD4L-eEF1A1 axis and its potential as a therapeutic target.

Read Full Abstract10.3724/abbs.2025101
Ly96-mediated activation of TGF-β1/Smad2/3 signaling in hepatocellular carcinoma and its potential for nanoparticle-based therapyGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

Ly96-mediated activation of TGF-β1/Smad2/3 signaling in hepatocellular carcinoma and its potential for nanoparticle-based therapy

Hepatocellular carcinoma (HCC) continues to pose a chief threat to the global healthcare landscape and is characterized by scarce therapeutic options and poor clinical outcomes, especially in advanced-stage disease. Although lymphocyte antigen 96 (LY96) is associated with immunogenic cell death, its specific role in HCC progression and therapeutic potential remains unclear. To identify prospective therapeutic targets in HCC, by combining the cancer-immunity cycle score with WGCNA and systems biology methods, we identify pivotal molecular interactions. By integrating the cancer-immunity cycle score with WGCNA and systems-level approaches, we systematically identify potential therapeutic targets in HCC. We evaluate LY96 expression at the transcriptomic and proteomic levels in HCC tissues and explore its prognostic relevance by drawing upon information from The Cancer Genome Atlas (TCGA) repository. The functional role of LY96 is delineated through a panel of cellular assays conducted in vitro, complemented by in vivo tumorigenesis models. To identify the downstream signaling cascades associated with LY96, gene set enrichment analysis (GSEA) is performed to elucidate the implicated pathways, which are then confirmed via experimental validation. Furthermore, we employ a lipid-polymer hybrid nanoparticle (NP) platform to facilitate the systemic delivery of an LY96 inhibitor and demonstrate its potential as a newly proposed intervention strategy for HCC. Clinically, marked LY96 overexpression occurs in HCC samples, where elevated LY96 expression is strongly associated with reduced overall survival (OS) among liver cancer patients. LY96 facilitates the progression of HCC via complementary in vitro and in vivo approaches. Mechanistically, LY96 induces the activation of the TGF-β1/Smad2/3 signaling axis in HCC. For therapeutic applications, we develop a liposome-based nanoparticle system that delivers the LY96 inhibitor L6H21 to tumor cells and effectively suppresses HCC progression through a combination of in vivo and in vitro studies. Taken together, the current observations identify LY96 as a promising diagnostic indicator and a viable intervention for therapeutic modulation to improve HCC treatment.

Read Full Abstract10.3724/abbs.2025128
Coupling of alternative splicing and alternative polyadenylationGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

Coupling of alternative splicing and alternative polyadenylation

RNA splicing and 3′-cleavage and polyadenylation (CPA) are essential processes for the maturation of RNA. There have been extensive independent studies of these regulated processing events, including alternative splicing (AS) and alternative polyadenylation (APA). However, growing evidence suggests potential crosstalk between splicing and 3′-end processing in regulating AS or APA. Here, we first provide a brief overview of the molecular machines involved in splicing and 3′-end processing events, and then review recent studies on the functions and mechanisms of the crosstalk between the two processes. On the one hand, 3′-end processing can affect splicing, as 3′-end processing factors and CPA-generated polyA tail promote the splicing of the last intron. Beyond that, 3′-end processing factors can also influence the splicing of internal and terminal exons. Those 3′-end processing factors can also interact with different RNA-binding proteins (RBPs) to exert their effects on AS. The length of 3′ untranslated region (3′ UTR) can affect the splicing of upstream exons. On the other hand, splicing and CPA may compete within introns in generating different products. Furthermore, splicing within the 3′ UTR is a significant factor contributing to 3′ UTR diversity. Splicing also influences 3′-end processing through the actions of certain splicing factors. Interestingly, some classical RBPs play dual roles in both splicing and 3′-end processing. Finally, we discuss how long-read sequencing technologies aid in understanding the coordination of AS-APA events and envision that these findings may potentially promote the development of new strategies for disease diagnosis and treatment.

Read Full Abstract10.3724/abbs.2024211
A visualized and quercetin-optimized three-dimensional culture model of mouse ovaries derived from fetal gonadsGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

A visualized and quercetin-optimized three-dimensional culture model of mouse ovaries derived from fetal gonads

The in vitro culture of ovarian tissue is emerging as a popular technology to study female reproductive medicine. However, standard in vitro culture conditions usually increase the level of reactive oxygen species (ROS), hindering ovarian development. Here, we establish an in vitro visualized mouse ovarian explant 3D culture model with the GFP-BVSC reporter system and obtain the early follicle pool from fetal female gonads. This model recapitulates in vivo ovarian characteristics and allows non-invasive monitoring of ovarian development. Importantly, supplementation with quercetin, a plant-derived natural antioxidant, increases the tissue area and total follicle count in cultured ovaries by protecting mitochondria and reducing ROS, thus more closely mimicking in vivo growth conditions. Finally, this visualized and optimized ovarian explant culture platform has been proven to be effective in modelling female ovarian diseases, such as the fetal reproductive aberrations of female offspring affected by gestational diabetes mellitus (GDM). Overall, our work extends the understanding of ovarian biology and creates an efficient and simplified platform for the morphological monitoring of ovarian development, as well as for drug screening and the clinical treatment of ovarian hypofunction.

Read Full Abstract10.3724/abbs.2025084
ATRX ADD domain is a versatile module for recognizing macroH2A, H3, and beyondGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

ATRX ADD domain is a versatile module for recognizing macroH2A, H3, and beyond

Alpha Thalassemia/Mental developmental retardation, X-linked (ATRX) is an important heterochromatin regulator, frequent mutated in ATR-X syndrome and various cancers. ATRX binds a histone variant macroH2A, forming a functional axis crucial for transcription regulation and genome stability. However, the molecular mechanism underlying the ATRX-macroH2A interaction remains obscure. Here we demonstrate that the ADD domain of ATRX (ATRXADD) specifically binds the histone-fold domain of macroH2A, but not the canonical H2A. The binding specificity is mediated by a D/E-rich loop of ATRXADD and the L12 loop of macroH2A. A swapping mutation in the L12 loop of macroH2A disrupts ATRX binding, whereas the reverse mutation in H2A confers binding capacity with ATRX. Notably, ATRXADD employs a conserved interface to recognize both macroH2A and H3, leading to competition between macroH2A and H3 for ATRX binding. Furthermore, affinity purification and mass spectrometry identify NuRD components as the potential ATRXADD-associating proteins, with CDH4 mimicking H3 in its direct interaction with ATRXADD. These findings elucidate the molecular basis of ATRX's interaction with macroH2A and NuRD, and also demonstrate the versatility of ATRXADD in recognizing diverse chromatin regulators, providing insights into ATRX's multifaceted roles in epigenetic regulation and pathogenesis.

Read Full Abstract10.3724/abbs.2025085
Integrated quantitative proteomics and phosphoproteomics analysis reveals USP46-POU4F1-HPSE signaling axis in the pathogenesis of Hirschsprung diseaseGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

Integrated quantitative proteomics and phosphoproteomics analysis reveals USP46-POU4F1-HPSE signaling axis in the pathogenesis of Hirschsprung disease

Hirschsprung’s disease (HSCR) is a congenital disorder characterized by the absence of enteric ganglion cells in the distal colon, resulting in functional intestinal obstruction. While genetic mutations and microenvironmental imbalances have been implicated in HSCR, the underlying molecular mechanisms are not fully understood. This study uses integrated quantitative proteomics and phosphoproteomics analyses to characterize the differential protein profiles and phosphorylation modifications associated with HSCR. These findings reveal significant dysregulation of the extracellular matrix (ECM) remodelling pathway, suggesting its potential involvement in HSCR pathogenesis. Notably, the deubiquitinating enzyme USP46 is found to be significantly reduced in the aganglionic segments of HSCR patients. Through IP-MS, GST pull-down, and co-immunoprecipitation assays, it is demonstrated that USP46 interacts with the transcription factor POU4F1. Mechanistically, USP46 stabilizes POU4F1 via deubiquitination, increasing its binding to the heparanase (HPSE) promoter and increasing HPSE expression, which in turn promotes ECM remodelling and neural cell migration. The role of the USP46-POU4F1-HPSE signaling axis in HSCR pathogenesis is confirmed via chromatin immunoprecipitation-qPCR, luciferase reporter assays, and transwell migration assays. This study elucidates a novel regulatory mechanism linking USP46-mediated protein stabilization to ECM dynamics and neural cell migration, offering new insights into HSCR pathogenesis and potential therapeutic targets.

Read Full Abstract10.3724/abbs.2025064
The biogenesis, regulation and functions of transitive siRNA in plantsGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

The biogenesis, regulation and functions of transitive siRNA in plants

Small RNA (sRNA)-mediated RNA interference (RNAi) is a sequence-specific gene silencing mechanism that modulates gene expression in eukaryotes. As core molecules of RNAi, various sRNAs are encoded in the plant genome or derived from invading RNA molecules, and their biogenesis depends on distinct genetic pathways. Transitive small interfering RNAs (siRNAs), which are sRNAs produced from double-strand RNA (dsRNA) in a process that depends on RNA-dependent RNA polymerases (RDRs), can amplify and spread silencing signals to additional transcripts, thereby enabling a phenomenon termed “transitive RNAi”. Members of this class of siRNAs function in various biological processes ranging from development to stress adaptation. In Arabidopsis thaliana, two RDRs participate in the generation of transitive siRNAs, acting cooperatively with various siRNA generation-related factors, such as the RNA-induced silencing complex (RISC) and aberrant RNAs. Transitive siRNAs are produced in diverse subcellular locations and structures under the control of various mechanisms, highlighting the intricacies of their biogenesis and functions. In this review, we discuss recent advances in understanding the molecular events of transitive siRNA biogenesis and its regulation, with a particular focus on factors involved in RDR recruitment. We aim to provide a comprehensive description of the generalized mechanism governing the biogenesis of transitive siRNAs. Additionally, we present an overview of the diverse biological functions of these siRNAs and raise some pressing questions in this area for further investigation.

Read Full Abstract10.3724/abbs.2024160
Functions and applications of RNA interference and small regulatory RNAsGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

Functions and applications of RNA interference and small regulatory RNAs

Small regulatory RNAs play a variety of crucial roles in eukaryotes, influencing gene regulation, developmental timing, antiviral defense, and genome integrity via a process termed RNA interference (RNAi). This process involves Argonaute/small RNA (AGO/sRNA) complexes that target transcripts via sequence complementarity and modulate gene expression and epigenetic modifications. RNAi is a highly conserved gene regulatory phenomenon that recognizes self- and non-self nucleic acids, thereby defending against invasive sequences. Since its discovery, RNAi has been widely applied in functional genomic studies and a range of practical applications. In this review, we focus on the current understanding of the biological roles of the RNAi pathway in transposon silencing, fertility, developmental regulation, immunity, stress responses, and acquired transgenerational inheritance. Additionally, we provide an overview of the applications of RNAi technology in biomedical research, agriculture, and therapeutics.

Read Full Abstract10.3724/abbs.2024196
Establishment and evaluation of a stable CHO cell line in which the nanobody PD-L1-Fc gene is precisely targeted into the C12orf35 locusGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

Establishment and evaluation of a stable CHO cell line in which the nanobody PD-L1-Fc gene is precisely targeted into the C12orf35 locus

Chinese hamster ovary (CHO) cells are an extensively used platform for manufacturing biopharmaceuticals, and nearly 80% of recombinant protein is produced by CHO cell lines. Randomly incorporating genes of interest into the genome is a common method for the development of stable CHO cell lines in industry, but it is vulnerable to genetic instability, is difficult to predict productivity, and is accompanied by a time-consuming and laborious screening process. Nonetheless, highly productive clones isolated from a randomized pool often exhibit unfavorable properties including transgene copy number loss and epigenetic silencing over the lifespan of the culture, ultimately lowering transgene transcription and corresponding recombinant protein production, which referred to as production instability. Thus, this challenging situation underscores the urgent desire for a new strategy to satisfy ever-growing industrial production requirements. The lack of specificity of gene integration, which is often susceptible to genetic instability, causes production instability. Alternatively, in recent years, many investigators have shown that the bottleneck arising from traditional randomized cell line development can be overcome through site-specific integration to insert exogenous pieces of DNA into a precise location, which permits their predictable function, allows high levels of transgene expression and makes it possible to generate homogeneous clones with consistent productivity and stability. The transcription and expression activities of genes are influenced by chromatin structural properties and the environment surrounding the genome, and loci that are capable of facilitating high and stable transgene transcription and expression are termed 'hotspots'. Many significant upfront advances have been made to identify potential hotspots, and a number of promising genome loci have been reported, such as the Hprt, Ywhae, Hipp11, Rosa26, and C12orf35 loci. The C12orf35 gene is located on a telomeric region of chromosome 8 in CHO cells. It is widely known that telomeres are usually noncoding, repetitive sequences distributed at chromosome terminals that act as buffers for those coding sequences further behind and thus enable foreign gene expression without interrupting functional genes. Studies have demonstrated that the C12orf35 gene is a potential locus for the integration of foreign genes in mammalian cells and that disruption of C12orf35 gene expression leads to increased productivities and shorter recovery times during selection pressure in CHO cells. Although the C12orf35 gene has been partially researched in cell line development, very few publicly available reports have systematically validated site-specific integration in cell lines concerning the stability of transgene passage, transgene transcription and expression levels. A range of studies have successfully utilized site-specific recombinase or genome editing tools to incorporate exogenous genes into the desired site in the CHO genome. Clustered regularly interspaced short palindromic repeats/Cas9 (CRISPR-Cas9), a leading gene editing tool, uses a guide RNA to target the DNA sequence with the Cas9 enzyme to induce cuts and allows easy, efficient and cost-effective edting. CRISPR-Cas9 has already been applied to mediate the insertion of targeted genes in mammalian cells, including CHO cells, for fundamental research. However, the adoption of this technology for industrial purposes remains to be investigated. Therefore, in this study, we sought to establish a CRISPR/Cas9-mediated site-specific integration strategy to overcome existing weaknesses and lay the foundation for the development of industrial rCHO cell lines.

Read Full Abstract10.3724/abbs.2025187
Primate-specific sperm lnc-CLCN7 reveals embryo quality in IVFGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

Primate-specific sperm lnc-CLCN7 reveals embryo quality in IVF

Long non-coding RNAs (lncRNAs) are an essential class of regulatory molecules that participate in diverse biological processes. However, whether sperm-derived lncRNAs from infertile men contribute to impaired embryo development during in vitro fertilization (IVF) remains unclear. In this study, we investigate the lncRNA expression profiles in sperm from asthenozoospermic patients with poor embryo development and explore their potential roles in early embryo development. Microarray analyses identify 993 differentially expressed lncRNAs in sperm samples from these patients, including 626 downregulated and 367 upregulated probes. Among them, an antisense transcript, lnc-CLCN7, is validated as the most significantly dysregulated lncRNA in an expanded cohort. In situ hybridization demonstrates that lnc-CLCN7 is localized in spermatogenic cells of primate testes and within the nuclei of HTR-8 cells. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses reveal that lnc-CLCN7 is associated with the regulation of ion transport, ion homeostasis and related signaling pathways. Further experiments demonstrate that Lnc-CLCN7 directly binds to the histone modification H3K9me2/3 in HTR-8 cells and that its expression in sperm is modulated by oxidative stress induced by H2O2 treatment. Additionally, dysregulation of the glycolysis/gluconeogenesis and pyrimidine metabolism pathways in sperm is found to contribute to poor embryo development. Collectively, our findings identify Lnc-CLCN7 as an H3K9me2/3-binding, oxidative stress–responsive lncRNA that may serve as a potential biomarker for predicting poor embryo development in IVF and provide new insights into the molecular mechanisms linking sperm RNA regulation to embryo quality.

Read Full Abstract10.3724/abbs.2025250
Role of the neurotransmitter-receptor pathway in T-cell tumor immunology and cancer immunotherapyGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

Role of the neurotransmitter-receptor pathway in T-cell tumor immunology and cancer immunotherapy

This review synthesizes how neurotransmitters—including glutamate, acetylcholine (ACh), γ-aminobutyric acid (GABA), serotonin (5-HT), and catecholamines—modulate T-cell immunity in the tumor microenvironment through activation, differentiation, trafficking, and checkpoint dependence. Glutamate amplifies T-cell receptor signaling but is counterbalanced by tumor-derived glutamate export. Cholinergic pathways exert dual effects through nicotinic and muscarinic receptors, whereas GABA generally imposes metabolic and signaling brakes that favor regulatory programs. Serotonin shows spatial divergence—suppressing peripheral responses but enhancing intratumoral cytotoxicity—and chronic β-adrenergic stress dampens effector function and limits immunotherapy efficacy. Advances in spatial multi-omics, single-cell profiling, and neuromodulation will help discover new targets across these axes. This review provides mechanistic insights and translational implications, highlighting emerging strategies such as glutamate receptor, metabotropic glutamate receptor 4 (mGluR4) or xCT (SLC7A11) inhibition, receptor subtype modulation, and β-blockade. Integrating neurotransmitter-receptor targeting with checkpoint inhibitors or cell therapies may improve the depth and durability of cancer immunotherapy.

Read Full Abstract10.3724/abbs.2025216
Dexamethasone induces ferroptosis in MC3T3-E1 cells by promoting DNMT3a-mediated Sirt1 DNA hypermethylation in the context of steroid-induced osteonecrosis of the femoral headGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

Dexamethasone induces ferroptosis in MC3T3-E1 cells by promoting DNMT3a-mediated Sirt1 DNA hypermethylation in the context of steroid-induced osteonecrosis of the femoral head

Ferroptosis, a novel form of regulated necrosis, has drawn the attention of the scientific community. Nevertheless, few studies have focused on the impact of ferroptosis on MC3T3-E1 cells in the context of steroid-induced osteonecrosis of the femoral head (SONFH). In this study, we explore the relationship between the degree of ferroptosis induced by dexamethasone (Dex) and the expression of silent information regulatory protein 1 (Sirt1). The results indicate that the ferroptosis level induced by Dex is mediated by the downregulation of Sirt1. Overexpression of Sirt1 increases the levels of the ferroptosis-related proteins SLC7A11 and GPX4 in MC3T3-E1 cells following Dex exposure. Moreover, the effect of Dex on Sirt1 expression is regulated by hypermethylation of the Sirt1 promoter, which is catalyzed by DNA methyltransferase 3a (DNMT3a). In summary, this study reveals that Dex can trigger ferroptosis by promoting DNMT3a-mediated DNA methylation and downregulating Sirt1 expression. Our findings provide an additional new mechanism for Dex-induced ferroptosis in MC3T3-E1 cells.

Read Full Abstract10.3724/abbs.2025096
HK2-mediated augmentation of endothelial cell glycolysis promotes placental vascular disorders through lactylation and pyroptosisGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

HK2-mediated augmentation of endothelial cell glycolysis promotes placental vascular disorders through lactylation and pyroptosis

Preeclampsia (PE) involves complex metabolic-inflammatory interactions, yet the mechanistic links among glycolysis, protein lactylation, and pyroptosis in placental pathogenesis remain undefined. In this study, we explore their tripartite relationship with PE development by combining bioinformatics analysis of PE-associated transcriptomes with experimental validation using placental tissues from PE patients and healthy controls. To elucidate the underlying mechanism, we utilize in vitro models involving hypoxic endothelial cell cultures, pharmacological glycolysis inhibition via 2-deoxyglucose, and genetic modulation of hexokinase 2 (HK2) expressions through siRNA silencing and plasmid-based overexpression. Molecular profiling is used to assess the expressions of key glycolytic enzymes, lactylation markers, and pyroptosis-related factors. Compared with control placental tissues, PE placental tissues present significantly higher expressions of glycolytic enzymes, elevated protein lactylation levels, and increased pyroptosis markers. Similarly, hypoxic endothelial cells exhibit coordinated upregulation of these three pathways. Notably, pharmacological glycolysis inhibition significantly reduces both lactylation and pyroptosis levels. Genetic experiments further demonstrate that HK2 silencing decreases glycolytic activity, subsequently attenuating lactylation and pyroptosis, whereas HK2 overexpression has opposite effects, underscoring its central regulatory role in this metabolic-inflammatory axis. Collectively, these findings indicate that HK2-mediated glycolysis drives placental vascular endothelial lactylation and pyroptosis, revealing a novel mechanistic pathway in PE pathophysiology.

Read Full Abstract10.3724/abbs.2025124
Reductive stress in cancer immunology and targeted therapyGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

Reductive stress in cancer immunology and targeted therapy

Reductive stress is characterized by the excessive accumulation of cellular reducing equivalents, leading to the disruption of cellular redox homeostasis and a shift toward a reductive intracellular environment. Immune cells exhibit particularly dynamic redox modulation to adapt to activation and differentiation processes during immune responses, such as tumor recognition and destruction. Unlike their immune counterparts, tumor cells employ a specific metabolic mode for uncontrolled proliferation and survival, which may also lead to a shift in the intracellular redox balance. While extensive research has focused on oxidative stress during the immune response and cancer treatment, studies on reductive stress are still in their infancy. This review summarizes the generation process of reductive stress and its impact on cellular function, detailing its mechanisms in immune cells and various cancers, as well as its relevance to cancer treatment. The aim of this study is to explore new avenues for cancer immunotherapy from the perspective of reductive stress.

Read Full Abstract10.3724/abbs.2025173
Hydrogen sulfide improves vascular endothelial function in hypertensive states through SIRT6 anti-inflammatory signalingGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

Hydrogen sulfide improves vascular endothelial function in hypertensive states through SIRT6 anti-inflammatory signaling

Hypertension is commonly accompanied by endothelial dysfunction, characterized by an imbalance between vasodilatation and constriction, increased levels of the proinflammatory factors interleukin-6 (IL-6) and intercellular adhesion molecule-1 (ICAM-1), and decreased nitric oxide (NO) bioavailability. Using an angiotensin II (Ang II)-induced endothelial dysfunction model, we show that treatment with the hydrogen sulfide (H₂S) donor GYY4137 significantly reverses Ang II-induced damage. GYY4137 restores sirtuin 6 (SIRT6) expression, suppresses inflammation, and improves vasodilatory function. Furthermore, endothelial-specific cystathionine-γ-lyase (CSE)-deficient mice exhibit inflammation and endothelial dysfunction in blood vessels, which is reversed by H₂S supplementation. Critically, SIRT6 inhibitors block the protective effects of H₂S in the endothelium. This study demonstrates that H₂S protects vascular endothelial function by activating the SIRT6 anti-inflammatory pathway.

Read Full Abstract10.3724/abbs.2025221
EOAI3402143 inhibits lung adenocarcinoma progression through the NF-κB/NR4A1 pathwayGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

EOAI3402143 inhibits lung adenocarcinoma progression through the NF-κB/NR4A1 pathway

Lung adenocarcinoma (LUAD) is currently the cancer with the highest morbidity and mortality rates in the world, and its targeted therapy, although effective, is limited in the types of targeted drugs and prone to drug resistance in treated patients. Therefore, the continuous discovery of new targeted therapeutic agents is particularly crucial for the treatment of LUAD. Here, we aim to investigate the antitumor effect of EOAI3402143 on LUAD and the potential mechanism of its action. We use flow cytometry to analyze apoptosis, transwell and colony formation assays to detect cell migration, invasion and proliferation ability; western blot, RT-qPCR and RNA-seq to analyze the signaling pathways involved in EOAI3402143; and in vivo experiments to test the therapeutic effect of EOAI3402143 on LUAD. Our results show that EOAI3402143 promotes apoptosis and inhibits the migration, invasion and proliferation of LUAD cells. Mechanistic studies reveal that EOAI3402143 inhibits the activation of the NF-κB pathway and suppresses the expression of NR4A1, which in turn inhibits the progression of LUAD. In vivo experiments reveal that EOAI3402143 has a better therapeutic effect on LUAD. These findings indicate that EOAI3402143 has significant antitumor efficacy against LUAD and is promising as a new therapeutic agent for LUAD.

Read Full Abstract10.3724/abbs.2025138
Decoding signaling architectures: CAR versus TCR dynamics in solid tumor immunotherapyGraphical AbstractVerified
Acta Biochimica et Biophysica Sinica

Decoding signaling architectures: CAR versus TCR dynamics in solid tumor immunotherapy

The T cell receptor (TCR) initiates signaling by specifically recognizing peptide-MHC complexes, triggering the phosphorylation of CD3 chain immunoreceptor tyrosine-based activation motifs (ITAMs). This recruits kinases such as ZAP70, triggering a tightly regulated signaling cascade that governs T cell activation, differentiation, and effector functions. In contrast, the chimeric antigen receptor (CAR) is a synthetic construct that bypasses MHC restriction by fusing an antigen-binding domain with intracellular signaling modules (usually CD3ζ and co-stimulatory domains) from the TCR complex and other receptors. CAR-T cell therapy has revolutionized the treatment of hematologic malignancies, resulting in durable remission of B-cell leukemia, lymphoma, and multiple myeloma. However, its efficacy in solid tumors is limited by intrinsic barriers: poor CAR-T-cell trafficking/infiltration into tumors, the immunosuppressive tumor microenvironment (TME), intratumoral metabolic competition, and tumor antigen heterogeneity/loss. To improve CAR-T-cell function in solid tumors, numerous studies have explored multiple strategies: engineering CARs to boost immune synapse formation via optimized receptor clustering, increasing the ITAM number/strength to amplify downstream signaling, and incorporating novel/multiple co-stimulatory domains to sustain T-cell activation and persistence. Additionally, approaches include the use of CAR-T cells that secrete pro-inflammatory cytokines, epigenetic reprogramming to preserve T-cell stemness and functionality, and the use of synthetic biology tools for tunable/logic-gated CAR activation. Here, we summarize the current understanding of CAR signaling dynamics and highlight recent breakthrough strategies designed to overcome these challenges in solid tumors. These advances narrow the liquid-solid tumor efficacy gap, holding promise for better clinical outcomes in patients with solid malignancies and a new era of personalized immunotherapy.

Read Full Abstract10.3724/abbs.2025190