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University of Science and Technology of China

Verified scientific contributions, CAS laboratory outputs, clinical trial papers, and engineering breakthroughs produced by researchers and faculty affiliated with University of Science and Technology of China.

Acta Biochimica et Biophysica Sinica•2026

Structural and functional insights into the distinct DNA recognition mechanisms of the terminase small subunit TerS from cyanophages

Authors: De-Qin Dong, Feng Yang, Kang Du, Kang Xu, Wen-Bin Cheng, Yuxing Chen, Cong-Zhao Zhou, Yong-Liang Jiang

Efficient genome packaging is a critical step in the phage life cycle, directly influencing viral maturation and infectivity. In tailed phages, this process is driven by a packaging motor composed of a portal protein and a terminase complex. The terminase complex usually consists of a large subunit (TerL) and a small subunit (TerS), which cooperate to recognize, cleave, and translocate genomic DNA into the capsid. However, due to the remarkable diversity and complexity of phage packaging systems, the molecular mechanisms governing TerS-mediated DNA recognition remain poorly understood. Here, we report the 3.51 Ă… cryo-electron microscopy structure of the TerS from the short-tailed cyanophage Pam5, which infects the host Pseudanabaena mucicola Chao 1806. Pam5 TerS assembles into a nonameric ring with a radially symmetric spiral architecture. Biochemical assays show that Pam5 TerS recognizes the genomic DNA via a specific interaction between the N-terminal helix-turn-helix (HTH) domain of TerS and a 21-bp DNA sequence within the terS gene. In contrast, the TerS from another short-tailed cyanophage, Pam1, which infects the same host, binds to DNA in a sequence-independent manner. These findings reveal that cyanophages, even infecting the same host, could adopt two distinct DNA recognition strategies: HTH-mediated sequence-dependent or sequence-independent modes. This work provides structural and mechanistic insights into the diverse DNA-recognition strategies of TerS and advances our understanding of the evolutionary plasticity of viral genome packaging mechanisms.

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Chinese Journal of Tissue Engineering Research•2026

Serum remnant cholesterol reduces bone quality in obese mice

Authors: HOU Xiao-li, CAO Fu-yuan, GAO Jing-yuan, XING Lei, LIU Ning, ZHANG Nan, FAN Xin-hao, CAO Guo-long, TIAN Fa-ming

BACKGROUND: High cumulative remnant cholesterol levels are associated with the risk of various metabolic diseases, but their impact on bone quality remains to be explored. OBJECTIVE: To investigate the effects of high cumulative remnant cholesterol levels on bone mass, microstructure, and biomechanical properties in high-fat diet treated mice. METHODS: Ten healthy male SPF-grade C57BL6 mice were randomly allocated into normal control group and high-fat diet group. The normal control group was fed a normal diet for 20 weeks, while the high-fat diet group was fed a high-fat, high-cholesterol diet for 20 weeks. Mouse body mass was detected every week. After 20 weeks of feeding, serum levels of total cholesterol, remnant cholesterol, low-density lipoprotein cholesterol, high-density lipoprotein cholesterol, type I collagen carboxy-terminal cross-linked telopeptide, and type I procollagen amino-terminal propeptide were measured. Micro-CT was used to assess the microstructure of femoral cancellous and cortical bone. Three-point bending test was performed to measure the elastic modulus and maximum stress of the femur. RT-qPCR was used to detect the mRNA expression of RUNT-related transcription factor 2, type I collagen, osteocalcin, alkaline phosphatase, osteoprotegerin, receptor activator of nuclear factor-ÎşB ligand, nuclear factor of activated T cells 1, and cathepsin K in the tibia. Pearson correlation analysis was used to analyze the correlation between remnant cholesterol, total cholesterol, high-density lipoprotein cholesterol, and low-density lipoprotein cholesterol levels and bone mineral density, as well as the correlation between remnant cholesterol levels and bone volume fraction, trabecular number, structure model index, and trabecular separation. RESULTS AND CONCLUSION: (1) From the 6th week of feeding, the body mass of mice in the high-fat diet group was higher than that in the control group (P < 0.05). The serum levels of total cholesterol, remnant cholesterol, and type I collagen carboxy-terminal cross-linked telopeptide in the high-fat diet group were higher than those in the control group (P < 0.05). (2) Micro-CT detection showed that compared with the control group, the bone microstructure of mice in the high-fat diet group underwent obvious degeneration, specifically manifested as significantly decreased bone mineral density, bone volume fraction, trabecular connectivity density, and trabecular number in cancellous bone, and significantly increased trabecular separation, structure model index, and trabecular pattern factor (P < 0.05). There were no significant changes in cortical bone thickness, volume, and area (P > 0.05). There was no significant difference in elastic modulus and maximum stress of the femur between the two groups (P > 0.05). (3) RT-qPCR detection showed that the mRNA expression of RUNT-related transcription factor 2, type I collagen, osteocalcin, alkaline phosphatase, and osteoprotegerin in the high-fat diet group was lower than that in the control group (P < 0.05), while the mRNA expression of nuclear factor of activated T cells 1 and cathepsin K was higher than that in the control group (P < 0.05). (4) Pearson analysis showed that remnant cholesterol and total cholesterol levels were significantly negatively correlated with bone mineral density (P < 0.05), and remnant cholesterol was significantly negatively correlated with bone volume fraction and trabecular number (P < 0.05), and significantly positively correlated with structure model index and trabecular separation (P < 0.05). These results indicate that remnant cholesterol may reduce bone quality by affecting the balance of bone turnover.

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Chinese Journal of Tissue Engineering Research•2026

Oxidative stress and osteoporosis: a bibliometric analysis of literature from SCI core database

Authors: GUO Jun, LU Zheng, YU Jinling, HAO Yuanyuan, LIU Kaishun, LIU Xuexia, HUANG Yourong

BACKGROUND: Oxidative stress, representing an imbalance between oxidative and antioxidant systems in the body, plays a crucial role in the pathogenesis of osteoporosis. However, a systematic analysis of the current research status and trends in the field of oxidative stress and osteoporosis is lacking. OBJECTIVE: To analyze the current research status, hot topics, and trends in the field of oxidative stress and osteoporosis using bibliometric methods. METHODS: The Web of Science core database was searched using “oxidative stress” and “osteoporosis” as search terms, with the language limited to “English” and the document type limited to “article” and “review article.” The search period was from January 1, 1999 to December 31, 2024. After screening the literature according to the inclusion and exclusion criteria, CiteSpace (6.3.R1) and VOSviewer (1.6.20) software were used for data analysis and visualization of publication volume, country, institution, author, journal, and keywords. RESULTS AND CONCLUSION: (1) Publication volume analysis: A total of 2 558 articles were retrieved, with 2 416 articles included. From 1999 to 2024, the number of publications in the field of oxidative stress and osteoporosis showed a significant increasing trend, especially after 2011, reflecting the gradual deepening and rising popularity of research in this field. (2) Country analysis: China ranked first with 1 088 publications, but the average citations per article were relatively low. The United States ranked second with 353 publications, but the average citations per article were as high as 74.62, demonstrating international influence in research quality. (3) Institution analysis: Chinese institutions dominated in publication volume, but the level of international cooperation needs improvement. Among them, Shanghai Jiao Tong University and Soochow University had extensive cooperation and high citation counts. (4) Author and co-cited author analysis: A few core authors such as Almeida and Manolagas had significant influence in this field, with extremely high citation counts and diverse collaboration models, dominated by international authors. (5) Journal analysis: American journals such as the Journal of Bone and Mineral Research occupied a core position in the field of osteoporosis and oxidative stress, with significant academic authority and influence. (6) Keyword analysis: The research core focused on the interaction mechanism between “osteoporosis” and “oxidative stress.” High-frequency keywords included “reactive oxygen species,” “inflammation,” “osteoblasts,” and “osteoclasts.” Keyword clustering analysis showed that research hotspots concentrated on inflammation, oxidative stress and bone metabolic imbalance, population and clinical studies, and the development and application of antioxidant therapy. (7) The field of oxidative stress and osteoporosis is growing rapidly. Although China occupies a dominant position, its international influence needs improvement. Future research should deeply analyze the oxidative stress signaling network, explore cross-disease interactions, develop novel antioxidants and therapeutic methods, promote precision medicine and multi-omics technology applications, and strengthen international cooperation and exchange, in order to provide more scientific and effective solutions for the prevention and treatment of osteoporosis.

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Chinese Journal of Tissue Engineering Research•2026

Bibliometric analysis of application of artificial intelligence in orthopedic imaging diagnosis

Authors: Yue Yuhang, Xie Liangyu, Shi Liupeng, Yin Zuozhen, Cao Shengnan, Shi Bin, Sun Guodong

BACKGROUND: In the process of applying artificial intelligence to orthopedic imaging, the technical system exhibits a clear hierarchical structure: machine learning is the primary pathway to achieving artificial intelligence, while convolutional neural networks, a branch of deep learning, have become the core model for image analysis. Clarifying this technical lineage helps to systematically review the research evolution and trends in this field through bibliometric methods. OBJECTIVE: To comprehensively analyze the research status and development trends of artificial intelligence in the field of orthopedic imaging based on bibliometric methods, providing ideas and methods for future research. METHODS: By searching the Web of Science Core Collection database, with keywords including artificial intelligence, deep learning, convolutional neural network, and orthopedic imaging, a total of 460 relevant English articles published between 2015 and 2025 were included. CiteSpace 6.4.R1, VOSviewer 1.6.20, and Bibliometrix software were used to conduct visual analysis from dimensions such as annual publication volume, country and institution distribution, author collaboration network, keyword co-occurrence, clustering, and burst word evolution. RESULTS AND CONCLUSION: (1) The number of publications in this field has steadily increased over the past 10 years. (2) China and the United States are the main publishing countries, with the United States showing outstanding performance in citation frequency and international collaboration influence; Sichuan University, the University of California, and Harvard University constitute a core collaborative institutional network. (3) Research hotspots mainly focus on bone age assessment, automated image segmentation, and the application of deep learning in fracture detection and osteoarthritis diagnosis. Related keywords such as bone age assessment, automated segmentation, and deep learning have continued to burst, indicating the evolutionary trajectory of research focus. (4) The research enthusiasm for artificial intelligence in orthopedic imaging continues to rise, with intelligent segmentation, disease grading, and multimodal data fusion being important future research directions. (5) This paper systematically reviews the field from a macro perspective, providing a reference for promoting the deep integration of artificial intelligence technology in orthopedic clinical practice; through bibliometric analysis, it constructs a knowledge map of the application of artificial intelligence in orthopedic imaging, systematically summarizes the research status and hotspots in this field, and aims to provide reference and guidance for future related research.

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Chinese Journal of Tissue Engineering Research•2026

Exosomes promote diabetic wound healing: a visual analysis of research hotspots and evolutionary trends

Authors: Jian Xichao, Shao Jingjie, Tang Shihan, Qi Fang, Deng Chengliang

BACKGROUND: Diabetes wound is one of the serious complications of diabetes patients, and its complex pathological mechanism and clinical treatment dilemma is still a major challenge. In recent years, exosomes have become a new focus in the field of diabetes wound research because they play a key role in intercellular communication, immune regulation, and tissue repair. OBJECTIVE: To investigate the research hotspots and evolutionary trends of exosomes in diabetic wound healing. METHODS: A systematic search was conducted in the Web of Science core collection to identify English literature focusing on exosomes in diabetic wound healing and published between the inception of the database and December 31, 2024. The annual publication volume was analyzed to track changes over time. Visual analyses using VOSviewer and CiteSpace software were performed on the retrieved literature to examine key aspects such as authors, countries, institutions, journals, and keywords, providing insights into the current research landscape and evolving hot topics in exosomes for diabetic wound healing. RESULTS AND CONCLUSION: From 2014 to 2024, a total of 424 publications on exosome-promoted diabetic wound healing were produced, contributed by 2,883 authors from 46 countries and featured in 199 journals. In the realm of exosome-promoted diabetic wound healing, China had the highest number of publications, followed by the United States. The journals 'Journal of Nanobiotechnology' and 'Advanced Healthcare Materials' published the most papers and had high influence. Author Chen Zhenbing and Huazhong University of Science and Technology were the most productive author and institution, respectively, but the researcher clusters have not yet reached a certain scale, and future collaboration needs to be strengthened. Global research focus mainly concentrated on 10 thematic clusters including adipose stem cells, diabetic wounds, diabetic wound healing, wound healing, endoplasmic reticulum stress, microvesicles, collagen, proteomics, and diabetic foot infection. The research hotspots in this field are undergoing a transition from molecular mechanisms to systematic interventions. Future research hotspots will focus on angiogenesis, macrophages, antibacterial, and hydrogels. On this basis, integrating multidisciplinary technologies to achieve more effective precision treatment and optimize management strategies for diabetic wounds.

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Chinese Journal of Tissue Engineering Research•2026

Stem cell-derived exosomes modulate the inflammatory microenvironment and enhance regenerative capacity of oligodendrocytes

Authors: ZHANG Xixian

BACKGROUND: The dynamic interplay between the inflammatory microenvironment and oligodendrocytes following neural injury constitutes a central pathological feature in neurodegenerative and demyelinating diseases. Stem cell-derived exosomes, leveraging their inherent low immunogenicity, efficient barrier-penetrating capacity, and targeted delivery of diverse pro-repair factors, play a pivotal role in modulating oligodendrocyte differentiation and the inflammatory microenvironment, thereby facilitating neural repair and regeneration. OBJECTIVE: To investigate the mechanisms by which stem cell-derived exosomes regulate the inflammatory microenvironment to enhance oligodendrocyte survival, differentiation, and myelin repair. It seeks to establish a novel "cell-free therapy" paradigm, utilizing exosome-mediated multi-component synergy (miRNAs, proteins, and metabolites) and microenvironmental adaptation for treating neurological disorders. METHODS: Literature searches were conducted in the China National Knowledge Infrastructure, PubMed, and WanFang databases, covering publications from 2010 to 2025. Chinese search terms included "exosomes, stem cells, engineered, diagnosis, inflammatory microenvironment, oligodendrocytes, signaling pathways," while English terms comprised "stem cell-derived exosomes, oligodendrocytes, inflammatory microenvironment, signaling pathway, regulatory mechanisms." Irrelevant studies were excluded, and 65 articles meeting inclusion criteria were systematically reviewed according to the inclusion and exclusion criteria. RESULTS AND CONCLUSION: (1) The biological characteristics of exosomes and their roles in the central nervous system were summarized, analyzing the impact of the inflammatory microenvironment on oligodendrocytes and the regulatory mechanisms of exosomes, including miRNA-mediated signaling pathway regulation, anti-inflammatory factor secretion, and immune cell function modulation. (2) The regulatory mechanisms of the inflammatory microenvironment on oligodendrocyte biological behavior and their roles in disease pathogenesis were elaborated. (3) An engineered exosome delivery system based on targeting peptide modification and functional molecule loading, combined with traditional Chinese medicine active ingredient regulation strategies, was proposed to construct a novel cell-free therapy paradigm. (4) The deep interaction between the exosome functional network and myelin homeostasis was explained at the molecular level, providing new therapeutic directions for the development of exosome-targeted delivery systems to intervene in central nervous system demyelinating diseases.

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Chinese Journal of Tissue Engineering Research•2026

Culture and identification of adipose-derived stem cells from periprostatic adipose tissue

Authors: Zhou Shukui, Liu Jinpeng, Gao Wenlong, Yang Shengke, Liao Hong, Wu Yi, Li Zeng

BACKGROUND: Periprostatic adipose tissue is the white visceral adipose tissue that is closest to the prostate, which is part of the prostate cancer tumor microenvironment and plays a key role in the occurrence and progression of prostate cancer. OBJECTIVE: To investigate the ability of adipose-derived stem cells derived from periprostatic adipose tissue to form three-dimensional cell sheets. METHODS: Periprostatic adipose tissue was harvested from patients undergoing radical prostatectomy. Adipose-derived stem cell suspensions were prepared using a combination of enzymatic digestion and mechanical dissection. Adipose-derived stem cell proliferation was assessed using a CCK-8 assay. Expression of stem cell-associated antigens CD34/CD44/CD45/CD90/CD105 was determined by flow cytometry. Multidirectional differentiation potential of the stem cells was assessed using osteogenic/adipogenic/chondrogenic differentiation assays. Adipose-derived stem cells were cultured for three weeks in low-glucose DMEM containing 100 ÎĽg/mL vitamin C and 10% fetal bovine serum to construct cell sheets, followed by histological analysis and scanning electron microscopy. RESULTS AND CONCLUSION: Adipose-derived stem cells from periprostatic adipose tissue exhibited a long spindle or fusiform shape, aligned growth, and consistent morphology. Primary culture reached 95% confluence at 9-10 days with good cell viability, and no obvious senescence was observed up to passage 15. Flow cytometry showed expression rates of CD44, CD90, and CD105 at 98.24%, 84.99%, and 89.14%, respectively, while CD34 and CD45 were expressed at 0.64% and 1.02%. After 3 weeks of osteogenic, adipogenic, and chondrogenic induction, the cells could differentiate into osteoblasts, adipocytes, and chondrocytes. After continuous culture for 3 weeks, the cells formed a three-dimensional cell sheet with a smooth surface and uniform texture, rich in extracellular matrix components such as fibronectin and type I collagen. Scanning electron microscopy revealed a flat surface with aligned long spindle-shaped cells and abundant extracellular matrix deposition between cells. This study successfully isolated adipose-derived stem cells from periprostatic adipose tissue of prostate cancer patients and constructed a three-dimensional cell sheet by stimulating extracellular matrix secretion with vitamin C over 3 weeks of continuous culture.

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Chinese Journal of Tissue Engineering Research•2026

Research status and trends of nanotechnology in improving photodynamic therapy for hypoxic tumors

Authors: Dilida·Bahetikelede, Zhou Xin, Wang Xinyi, Zeng Zhihan, Wang Liqiong, Hu Danrong

BACKGROUND: Photodynamic therapy, a novel tumor treatment, is limited by the hypoxic tumor microenvironment. Nanotechnology-based oxygen regulation strategies offer a novel approach to overcoming this bottleneck. OBJECTIVE: To systematically analyze the research status of nanotechnology in improving photodynamic therapy for hypoxic solid tumors using bibliometric methods, identify hotspots, and predict future directions. METHODS: Publications and reviews from 2016 to 2025 on nanotechnology for regulating tumor hypoxia and enhancing photodynamic therapy were retrieved from the Web of Science Core Collection. Excel, CiteSpace, VOSviewer, and Bibliometrix were used for visual analysis of categories, publication trends, countries, institutions, authors, co-cited references, and keywords. RESULTS AND CONCLUSION: A total of 1,879 articles were included, with 'nanoscience & nanotechnology' as the core category. From 2016 to 2022, publications increased steadily, with a slight decline in 2023 and a subsequent rise. China was the leading country, with the Chinese Academy of Sciences having the highest output, and Liu Zhuang from Soochow University being the most prolific author. The most cited paper was by Zhou ZJ et al. (2016) in Chemical Society Reviews. The field focuses on cancer treatment, particularly microenvironment-responsive optical therapeutic strategies using nanomaterials. Keywords 'Photodynamic therapy' and 'Nanoparticles' appeared most frequently. Bibliometric analysis indicates that nanotechnology offers advantages in enhancing photodynamic therapy for hypoxic tumors, with promising efficacy and safety. Future hotspots may focus on combination with immunotherapy.

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Chinese Journal of Tissue Engineering Research•2026

Correlation between body mass index and early recovery outcomes after kidney transplantation

Authors: ZHONG Xiaoping, CHEN Dan, XIE Nianhua

BACKGROUND: The proportion of obesity in the Chinese population has increased year by year, but its impact on early renal function recovery after kidney transplantation has not been systematically elucidated, and localized research is urgently needed to provide evidence-based basis. OBJECTIVE: To investigate the effect of different body mass indexes on early renal function recovery in renal transplant recipients after surgery, to analyze the association between body mass index and postoperative creatinine, urine volume and hospital stay, and to propose clinical recommendations for individualized management. METHODS: The clinical data of 495 renal transplant recipients in the Second Xiangya Hospital of Central South University from 2019 to 2020 were retrospectively analyzed. According to the Chinese obesity standard, they were divided into a lean group (body mass index < 18.5 kg/m2, n=78), a normal group (18.5 ≤ body mass index < 24 kg/m2, n=273), an overweight group (24 kg/m2 ≤ body mass index < 28 kg/m2, n=119), and an obese group (body mass index ≥ 28 kg/m2, n=25). The baseline characteristics, postoperative creatinine, urine volume, and hospital stay were compared among the groups. Multivariate regression analysis was used to analyze the independent effect of body mass index on postoperative recovery. RESULTS AND CONCLUSION: (1) The age of the obese group was significantly higher than that of other groups (P < 0.001), the proportion of living donors (0%) was the lowest (P=0.015), the creatinine level on postoperative day 1 and hospital stay were the highest (P < 0.001), and urine volume was the lowest (P < 0.001); (2) Multivariate regression showed that for each 1 kg/m2 increase in body mass index, creatinine on postoperative day 1 increased by 38 μmol/L (β=0.38, P < 0.001), and urine volume decreased by 32 mL (β=-0.41, P < 0.001); (3) It is suggested that elevated body mass index is an independent risk factor for slow early renal function recovery and prolonged hospital stay after kidney transplantation; based on the Chinese obesity standard (body mass index ≥ 28 kg/m2), it is recommended to strengthen perioperative monitoring, optimize immunosuppressive regimens, and formulate individualized fluid management strategies for obese recipients to improve prognosis. This study can provide evidence-based basis for localized body mass index stratified management.

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Chinese Journal of Tissue Engineering Research•2026

Lentivirus-mediated gene therapy in a beta-thalassemia mouse model

Authors: Liu Hongwei, Chang Lungji

BACKGROUND: Lentiviral vector (LV)-mediated autologous hematopoietic stem cell gene therapy is expected to be a novel curative treatment for β-thalassemia. The LV serves as a core agent of gene therapy, directly influencing future clinical efficacy and treatment costs. Therefore, the primary task is to develop high-performance lentiviral vectors. OBJECTIVE: To explore the feasibility of an ex vivo gene therapy and assess the activity and functionality of the β-globin-LV in thalassemic mice. METHODS: A novel lentiviral vector, HS40-LV, carrying the human β-globin gene cassette, was constructed. 7.5 Gy-conditioned Hbbth3/+ mice were subjected to HS40-LV-modified hematopoietic stem cell transplantation. Normal mice and untreated thalassemic mice served as controls. Peripheral blood samples were collected from mice at 2, 4, 6, 8, and 10 months post-treatment. The integrated proviral DNA in the individual sample was detected by using qPCR. The proportion of red blood cells expressing human β-globin was detected by fluorescence-activated cell sorting. Fresh whole blood was collected for blood smears, which were used for Giemsa staining, reticulocyte staining, and fully automated blood cell analysis. At 10 months post-treatment, the liver, spleen, and bone marrow tissues were sampled from all three groups to prepare single-cell suspensions and extract genomic DNA for qPCR detection of vector marking; flow cytometry was used to detect cells expressing transgenic β-globin; portions of spleen and liver were subjected to hematoxylin-eosin staining and Prussian blue staining. RESULTS AND CONCLUSION: (1) The HS40-LV vector achieved a transduction efficiency of 50% in hematopoietic stem cells. (2) During the 10-month follow-up, the proportion of vector-marked cells and β-globin-positive red blood cells in peripheral blood of treated mice steadily increased, reaching an average of 50% vector marking and 70% β-globin-positive red blood cells at 10 months post-transplantation. (3) Biological distribution of the lentiviral vector and expression of transgenic β-globin were also detected in liver, spleen, and bone marrow hematopoietic tissues. (4) Gene therapy corrected hematological parameters in thalassemic mice, such as significant reductions in poikilocytes, reticulocytes, and cell fragments, and a significant increase in overall hemoglobin levels. (5) Histopathological improvements were also observed, with significant reductions in iron deposition in spleen and liver, and improved extramedullary hematopoiesis. These results indicate that the novel HS40-LV vector achieved stable expression in vivo, and modified cells corrected some symptoms in thalassemic mice.

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Chinese Journal of Tissue Engineering Research•2026

Mechanisms by which mangiferin alleviates pain in osteoarthritis: integration of microarray data analysis, network pharmacology, and experimental validation in a rat model

Authors: Jing Kun, Wang Yulu, Liang Hao, Huo Yuhang, Cong Longxu

BACKGROUND: Mangiferin, a major bioactive compound derived from mango trees, is widely present in various traditional Chinese medicinal herbs and exhibits multiple biological functions including antibacterial, cholesterol-lowering, and anti-allergic effects. Existing studies have suggested that mangiferin may prevent and treat osteoarthritis pain. However, its specific mechanism of action remains unclear to date. OBJECTIVE: To systematically investigate the key targets and potential mechanisms of mangiferin in the treatment of osteoarthritis by integrating gene expression omnibus (GEO) microarray data analysis, network pharmacology, and molecular docking techniques, and to validate the findings in a rat model. METHODS: First, GEO microarray data were mined to identify potential therapeutic targets for osteoarthritis. Next, professional databases were integrated to predict the targets of mangiferin, and target information related to osteoarthritis was collected. A Venn diagram was generated using the Weishengxin platform, a protein-protein interaction network was constructed based on the STRING database, and Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses were performed. Cytoscape 3.8.0 software was used to construct a drug-target-pathway-disease network, and molecular docking analysis and visualization were performed using the CBDOCK2 online docking platform. A rat model of osteoarthritis was established by anterior cruciate ligament transection of the left knee joint, and different concentrations of mangiferin were administered to observe and record the therapeutic effects. RESULTS AND CONCLUSION: A total of 144 potential targets of mangiferin were identified from multiple databases. Protein-protein interaction network analysis revealed important targets including interleukin-6, tumor necrosis factor, and nuclear factor kappa B1. Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis showed that 235 signaling pathways might be involved, including lipid and atherosclerosis-related pathways, advanced glycation end products-receptor, hypoxia-inducible factor 1, and estrogen, which are closely related to inflammation. In animal experiments, after 4 weeks of intervention with 40 ÎĽmol/L mangiferin, there was no significant difference in hindlimb weight-bearing compared with the sham-operated group. These findings suggest that mangiferin may exert therapeutic effects on osteoarthritis through a multi-target, multi-pathway mode of action, providing a new strategy and theoretical support for the treatment of osteoarthritis.

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Chinese Journal of Tissue Engineering Research•2026

Bibliometric analysis of trends and hotspots in immune cells for fibrotic diseases

Authors: ZHANG Shuangzhen, PAN Ling, LIU Rui

BACKGROUND: Research on multi-organ fibrotic diseases has gained increasing prominence in recent years. Immune cells play a crucial regulatory role in the pathogenesis of fibrotic diseases across various organs; however, a comprehensive bibliometric analysis in this specific research field is currently lacking. OBJECTIVE: To systematically analyze the current research status, hotspots, and emerging trends in the field of immune cells and fibrotic diseases using bibliometric methods. METHODS: Publications on immune cells and fibrotic diseases of the liver, lungs, kidneys, and heart were collected from the Web of Science Core Collection database spanning January 1, 2000 to December 31, 2024. Bibliometric and visual knowledge mapping analyses were performed on the extracted data using VOSviewer, CiteSpace, and the R package "bibliometrix". RESULTS AND CONCLUSION: A total of 1 777 relevant articles were identified. These publications were contributed by 11 347 authors from 2 239 institutions across 73 countries and were published in 637 academic journals. From January 1, 2000 to December 31, 2024, the annual publication volume showed an overall increasing trend. China, the United States, and Germany were the major contributing countries. The most prolific institutions were Zhejiang University and Huazhong University of Science and Technology in China. The most cited institution was RWTH Aachen University Hospital in Germany. The most productive journal was Frontiers in Immunology. The most prolific authors were Tacke, Frank and Trautwein, Christian. Core keywords included liver fibrosis, pulmonary fibrosis, macrophages, expression, and activation. The bibliometric analysis revealed a paradigm shift from single-organ studies to shared immune mechanisms, with the field evolving from basic research on liver fibrosis to molecular and cellular targeted regulation of multi-organ fibrosis including heart, lung, and kidney. KEYWORDS: fibrosis; immune cells; bibliometrics; visual analysis; VOSviewer software; CiteSpace software; single-cell sequencing technology; macrophages

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Chinese Journal of Tissue Engineering Research•2026

Animal models of Parkinson's disease: research status and trend analysis

Authors: Li Huiping, Jia Huanhuan, Zhao Weibo

BACKGROUND: To further elucidate the etiology and pathogenesis of Parkinson's disease, standardized animal models that more closely mimic clinical conditions have garnered significant attention and achieved notable progress. OBJECTIVE: To review and summarize the current status, development trajectory, and trends in Parkinson's disease animal model research. METHODS: A total of 10 170 relevant literature from two databases, CNKI and Web of Science, were used as data samples. CiteSpace bibliometric software was then used to draw and analyze knowledge graphs of co-occurrence, clustering, emergent terms of keywords, literature publication volume, national/regional publication volume, institutional cooperation network, and literature citation in Parkinson's disease animal model research, followed by analysis. RESULTS AND CONCLUSION: The overall publication volume of Parkinson's disease animal model research, both domestically and internationally, has shown a fluctuating upward trend, with significant growth observed in the Web of Science database. China and the United States were the top publishing countries, accounting for 52.6% of total publications and emerging as primary contributors to research outcomes in this field. The leading domestic institution was Shanghai University of Traditional Chinese Medicine (131 papers), while internationally, Harvard University was the institution with the most publications (263 papers). The distribution of journals and disciplines at home and abroad is concentrated in neuroscience, neurology, molecular biology, traditional Chinese medicine, basic medicine, pharmacology, and other fields. In particular, traditional Chinese medicine treatment of Parkinson's disease has received great attention from domestic scholars, and the potential for interdisciplinary cooperation is huge. Pathological mechanisms related to Parkinson's disease animal models, such as neuroinflammation, gut microbiota, oxidative stress, mitochondrial dysfunction, and α-synuclein, are research hotspots in this field, and ferroptosis has become an emerging theme in domestic research on the mechanism of Parkinson's disease. In terms of treatment of Parkinson's disease symptoms, in addition to the continuous deepening of research on the treatment of Parkinson's disease in traditional Chinese medicine and Western medicine through animal models, new methods such as gene therapy and stem cell transplantation therapy have provided innovative therapeutic strategies in animal model research of Parkinson's disease. With the advancement of the national 'Brain Science Project' and the development of gene editing, artificial intelligence, machine learning, and brain-computer interface technology, these new technologies also have certain exploration space in Parkinson's disease research in the future.

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Acta Biochimica et Biophysica Sinica•2026

Development of an in vitro TurboID labeling assay for the detection of protoRAG-interacting proteins in the amphioxus

Authors: Qingyi Lu, Jie Xu, Junye Hong, Enfan Xiao, Qiuzhu Wei, Yuhe Sun, Zihan Zhao, Yuhang Zhang, Guangrui Huang

The recombination-activating gene (RAG)-mediated V(D)J rearrangement mechanism is essential for generating the diversity of the adaptive immune system in jawed vertebrates. The RAG1 and RAG2 proteins form a tetrameric complex that recognizes and cleaves pairs of recombination signal sequences (RSSs). In jawed vertebrates, the N-terminal region of RAG1 and the C-terminal region of RAG2 are critical for the regulation of physiological function and enhancement of recombination accuracy. Moreover, the intracellular activity of RAG1/2 is rigorously regulated and is thought to represent the aspect shaped by host coevolution. However, these regulatory mechanisms remain incompletely understood, impeding our deeper understanding of the physiological functions of RAG. Previous studies have shown that jawed vertebrate RAG evolved from invertebrate RAG-like (RAGL) transposases and underwent key structural changes during evolution. RAGL genes have been identified in multiple invertebrate species, but from Branchiostoma belcheri (Bb), the RAG-like protein in Bb amphioxus (BbRAG1L) and the RAG2-like protein in Bb amphioxus (BbRAG2L) are among the most extensively characterized to date. Lancelets (amphioxus) represent the most basal extant chordates (cephalochordates) that diverged from the other two chordate lineages (urochordates and vertebrates). Consequently, amphioxus has been considered a “living fossil” for studying the origins and evolution of adaptive immunity. Homologs of the core structural domain of RAG1 were discovered in the amphioxus genome in 2005, and the homologs were subsequently shown to exhibit recombinase activity in cooperation with murine-derived RAG2. A large number of transposon genes were then identified in the amphioxus genome, followed by the identification of target site duplication (TSD) and terminal inverted repeat (TIR) sequences in the amphioxus genome. Notably, BbRAG2L lacks the C-terminal region present in murine RAG2, including the acidic hinge and PHD domain. BbRAG1L coupled with BbRAG2L displays significant transposition activity in vitro and in human cell lines. In contrast, vertebrate RAG exhibits limited transposon activity in vitro and extremely low transposon activity in vivo. This leads to the question of how RAG lost its transposase activity during evolution. Structural comparison and functional experiments of BbRAGL (protoRAG) and vertebrate RAG have revealed that vertebrates undergo essential adaptive changes to eliminate the primitive transposase activity of protoRAG. Research on BbRAGL has therefore provided strong support for the hypothesis that RAG originated from a domesticated transposon. Given the similarity in both structure and function between BbRAG1L and vertebrate RAG and the fact that BbRAGL proteins are the only RAGL proteins that can currently be efficiently expressed in vertebrate cells, characterizing the binding partners of BbRAGL involved in amphioxus is of great significance for understanding the regulation of BbRAGL and its adaptation and evolution. Parallel comparison of BbRAGL and RAG interaction networks may further clarify how BbRAGL transitioned from a transposase to a recombinase during host coevolution and reveal general principles of vertebrate intracellular RAG regulation. In recent years, proximity labeling techniques have greatly facilitated approaches to identifying RAG cofactors. For example, RAG1 fused to biotin ligase RAG1 fused to a biotin ligase found in Escherichia coli (BirM) has been used to define dynamic interaction networks of RAG-associated proteins. Inspired by these advances, we sought to apply a similar approach to identify the BbRAGL cofactors in amphioxus and build a regulatory network of BbRAGL that could shed light on its relationship with host evolution. However, endogenous BbRAGL expression is undetectable in the adult amphioxus (data not shown), and the generation of transgenic amphioxus lines expressing proximity-based labeling proteins remains technically challenging. These constraints make it difficult to analyze native cofactors of endogenous BbRAGL in vivo. Because BbRAGL can be expressed in vertebrate cell lines, we instead developed an in vitro proximity-labeling strategy. We fused TurboID (TbID), an engineered biotin ligase, to the N-terminus of BbRAG1L or BbRAG2L (Figure 1A), purified the fusion proteins, and incubated them with protein lysates prepared from the hepatic cecum and colons of adult B. belcheri amphioxus in vitro to label the interacting proteins. The proteins were finally analyzed by liquid chromatography-tandem mass spectrometry (LC-MS/MS) (Figure 1B). A pTT5 vector was used to express plasmids encoding maltose-binding protein (MBP) and TurboID with or without full-length BbRAG1L or BbRAG2L, yielding pTT5-MBP-TurboID, pTT5-MBP-TurboID-BbRAG1L, and pTT5-MBP-TurboID-BbRAG2L. Plasmids expressing MBP-BbRAG1L and MBP-BbRAG2L were also generated.

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Acta Biochimica et Biophysica Sinica•2026

Spatiotemporal Orchestration of Macrophage Heterogeneity by Cell Adhesion Molecules

Authors: Jing Yu, Chen Li, Hanlin Qiao, Jinrong Suo, Danting Yang, Changdong Lin

Monocyte-derived macrophages (mo-macs) are central regulators of innate immunity and are essential for maintaining physiological homeostasis and host defense. Their functional efficacy relies on precisely coordinated transendothelial migration (TEM) and phenotypic polarization into classically activated (M1) or alternatively activated (M2) macrophages. This review delineates how cell adhesion molecules (CAMs), including integrins, selectins, the immunoglobulin superfamily (IgSF), and cadherins, act as pivotal sensors that orchestrate these spatiotemporal dynamics. CAMs facilitate the multi-step TEM of mo-macs and trigger intracellular signaling pathways, such as nuclear factor kappa-light-chain-enhancer of activated B cells (NF-ÎşB) and signal transducer and activator of transcription (STAT), to dictate macrophage plasticity in response to inflammation and the tumor microenvironment (TME). We highlight the dual role of CAMs in driving the pathogenesis of atherosclerosis and cancer while also exploring their potential in bioengineering for regenerative medicine. Elucidating these CAM-dependent regulatory networks not only helps to explain the intrinsic mechanisms underlying immune regulation but also provides a theoretical framework for designing next-generation targeted immunotherapies and personalized clinical interventions for inflammatory diseases and malignancies.

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Acta Biochimica et Biophysica Sinica•2026

Structural and functional insights into the distinct DNA recognition mechanisms of the terminase small subunit TerS from cyanophages

Authors: De-Qin Dong, Feng Yang, Kang Du, Kang Xu, Wen-Bin Cheng, Yuxing Chen, Cong-Zhao Zhou, Yong-Liang Jiang

Efficient genome packaging is a critical step in the phage life cycle, directly influencing the viral maturation and infectivity. In tailed phages, this process is driven by a packaging motor composed of a portal protein and a terminase complex. The terminase complex usually consists of a large subunit (TerL) and a small subunit (TerS), which cooperate to recognize, cleave, and translocate genomic DNA into the capsid. However, due to the remarkable diversity and complexity of phage packaging systems, the molecular mechanisms governing TerS-mediated DNA recognition remain poorly understood. Here, we report the 3.51 Ă… cryo-electron microscopy structure of the TerS from the short-tailed cyanophage Pam5, which infects the host Pseudanabaena mucicola Chao 1806. Pam5 TerS assembles into a nonameric ring with a radially symmetric spiral architecture. Biochemical assays show that Pam5 TerS recognizes the genomic DNA via a specific interaction between the N-terminal helix-turn-helix (HTH) domain of TerS and a 21-bp DNA sequence within the terS gene. In contrast, the TerS from another short-tailed cyanophage, Pam1, which infects the same host, binds to DNA in a sequence-independent manner. These findings reveal that cyanophages, even infecting the same host, could adopt two distinct DNA recognition strategies: HTH-mediated sequence-dependent or sequence-independent modes. This work provides structural and mechanistic insights into the diverse DNA-recognition strategies of TerS and advances our understanding of the evolutionary plasticity of viral genome packaging mechanisms.

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Acta Biochimica et Biophysica Sinica•2026

Structural basis for the FOXM1 DNA binding domain to specific dsDNA substrate

Authors: Mingxuan Sun, Lei Wang, Jing Cui, Liang Zhang, Yunyu Shi, Chao Xu, Wanwan Zhou, Mengqi Lv

Forkhead box protein M1 (FOXM1) is a key transcription factor that regulates cell cycle progression and is frequently overexpressed in human cancers, driving tumor proliferation and therapy resistance. FOXM1 recognizes the canonical forkhead response element (FKH motif, RYAAAYA) through its conserved DNA-binding domain (DBD). Here, we report the high-resolution crystal structure of the FOXM1-DBD in complex with a double-stranded DNA substrate containing two FKH motifs. The structure reveals that FOXM1-DBD adopts the canonical winged-helix fold, with the third α-helix (α3) inserted into the DNA major groove to mediate sequence-specific recognition. Within this helix, Asn283, Arg286, and His287 form an essential triad that engages DNA bases through specific hydrogen bonds and hydrophobic interactions. Using structure-guided mutagenesis of key DNA-interacting residues combined with biophysical validation by isothermal titration calorimetry (ITC) and DNA binding assessment via electrophoretic mobility shift assay (EMSA), we confirm the functional importance of these residues and uncover position-dependent tolerance to base substitutions within the FKH motif. Furthermore, we demonstrate that FOXM1 overexpression promotes cell proliferation and upregulates the transcription of target genes in a DBD-dependent manner. Our findings provide a structural basis for understanding the DNA recognition mechanism of FOXM1 and offer mechanistic insights into how FOXM1 selectively binds to its genomic targets to regulate transcription.

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Acta Biochimica et Biophysica Sinica•2026

Mixed fungal polysaccharides enhance intestinal health, antioxidant capacity, and microbiota diversity in broiler chickens

Authors: Bingyu Zhu, Enze Zhang, Min Yang, Ye Zhang, Can Liu, Runxin Jiao, Mengling Peng, Jie Zhou, Jianbo Cheng, Juhua Wang

Poultry production faces escalating challenges from intensive farming practices, where stressors, including high stocking density, pathogen exposure, and dietary fluctuations, disrupt intestinal integrity, microbiota balance, and antioxidant defenses. These disruptions impair nutrient absorption, growth performance, and immune function, leading to significant economic losses. Although antibiotics have historically mitigated such issues, growing restrictions due to antimicrobial resistance necessitate natural alternatives. Fungal polysaccharides (FP)—notably lentinan (LNT) from Lentinula edodes and polysaccharide from Ganoderma lucidum (GLP), are promising candidates owing to their immunomodulatory, antioxidant, and prebiotic properties. However, existing research focuses predominantly on individual FP, neglecting potential synergies in blended formulations. Structurally, LNT (β-(1→3)-D-glucan backbone) enhances rumen volatile fatty acid production and fiber degradation, whereas GLP (heterogeneous α/β-glycans) potently activates the Nrf2/HO-1 antioxidant pathway and modulates Th1/Th2 immunity. These divergent mechanisms imply complementary effects when combined. In our previous experiments on broiler feeding, we reported that a combination of GLP (68.32% polysaccharide content, composed of mannose, glucose, arabinose, rhamnose, and galactose at a molar ratio of 1.00:16.37:18.82:1.42:17.42) and LNT (76.52% polysaccharide content, composed of mannose, galacturonic acid, arabinose, galactose, glucose, and rhamnose at a molar ratio of 1.00:15.22:8.23:2.05:1.78:4.26) at a 1:1 ratio maximally promoted broiler growth (unpublished data), but their impacts on intestinal morphology, antioxidant signaling, and the microbiota remain uncharacterized. We therefore hypothesize that mixed FP synergistically may enhance intestinal health by simultaneously improving nutrient absorption, activating antioxidant pathways, and stabilizing microbial ecosystems. To investigate the effects of mixed FP on intestinal development, 240 one-day-old Arbor Acres male broilers were randomly assigned to the 0 mg/kg FP (Control), 200 mg/kg FP (Group I), 400 mg/kg FP (Group II), and 600 mg/kg FP (Group III) groups. Broilers were housed in three-tier battery cages (0.7 m × 0.7 m × 0.4 m; 12 broilers/cage), with five replicate cages per experimental group maintained under identical conditions. The experiments were approved by the College of Animal Science and Technology in Anhui Agricultural University (approval number: SYXK 2016-007). All the cages were subjected to a 16 h light: 8 h dark cycle with ad libitum access to water and twice-daily feeding (09:00/16:00) of basal diets (Supplementary Table S1). On day 42, the duodenum, jejunum, and ileum segments were collected, fixed in 4% paraformaldehyde, sectioned at 5 μm, and stained with hematoxylin-eosin. Villus height (VH), crypt depth (CD), and VH/CD ratios were measured via Case Viewer software. The results revealed that Group II significantly increased VH and VH/CD across all the intestinal segments while reducing CD (Figure 1A; P < 0.05 vs the control); these findings suggest enhanced nutrient absorption capacity and intestinal health. To evaluate antioxidant capacity and signaling pathway activation, intestinal tissues were homogenized in PBS (1:9, w/v). The total antioxidant capacity (T-AOC), total superoxide dismutase (T-SOD), and glutathione peroxidase (GSH-Px) activities were determined via commercial kits (Nanjing Jiancheng Bioengineering Institute, Nanjing, China)). For gene expression analysis, total RNA was extracted and reverse-transcribed. The qPCR was performed via specific primers for HO-1, NQO1, CAT, Nrf2, and Keap1, with β-actin used as the reference gene (primer sequences and product sizes are listed in Supplementary Table S2). The results demonstrated that Group II significantly elevated antioxidant enzyme activities (P < 0.05), upregulated HO-1, NQO1, CAT, and Nrf2, and

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Acta Biochimica et Biophysica Sinica•2026

Directly targeting G-quadruplexes contributes to the anti-multiple myeloma efficacy of Epimedokoreanin B

Authors: Pingting Jia, Shangzhao Wang, Wanting Huang, Ye Fang, Jian Gao

Multiple myeloma (MM) is a hematological malignancy for which novel therapeutic strategies are urgently needed. Epimedokoreanin B (EKB), an isoprenylated flavonoid compound derived from the medicinal plant Epimedium koreanum, has demonstrated promising antitumor activity. However, its effects on MM have not been previously investigated. This study explores the anti-MM activity and the molecular interaction mechanisms between EKB and G-quadruplexes (G4) through a combination of biological activity assessments and computer-aided methodologies. EKB exhibits potent cytotoxicity against the MM cell lines U266 and RPMI-8226, with IC50 values of 5.28 μM and 6.81 μM, respectively. It induces apoptosis in a concentration-dependent manner and specifically stabilizes the G4 structures of oncogenes such as c-Myc, c-KIT, Bcl-2, and k-RAS, as confirmed by BG4 immunofluorescence staining and fluorescence resonance energy transfer (FRET) assays. Additionally, EKB significantly suppresses the mRNA and protein expression levels of these genes in myeloma cells. Computational studies, including molecular docking, molecular dynamics (MD) simulations, and MM/GBSA calculations, confirm the strong binding affinity and stabilizing effects of EKB on G4s, revealing a mechanism involving π-π stacking and hydrogen bonding. This discovery underscores the unique ability of EKB to increase the stability of G4 structures, which are critical for regulating gene expression and inhibiting cancer cell proliferation. This research highlights the therapeutic potential of EKB in targeting these specific molecular structures, thereby offering a more effective approach to managing MM.

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Acta Biochimica et Biophysica Sinica•2026

Integrating genetically encoded fluorescent sensors to elucidate the spatiotemporal choreography of necrosis by sodium overload

Authors: Yike Song, Yale Xia, Yin Fu, Jing Yao, Lian Zeng, Yuxi Duan, Ni Su, Xie Li, Xiawei Cheng, Yuzheng Zhao, Yi Yang, Yejun Zou

Necrosis by sodium overload (NECSO) is a distinct cell death modality induced by the chemical regulator necrocide 1 (NC1), which targets the transient receptor potential melastatin 4 (TRPM4) channel to drive excessive sodium influx and potassium efflux. This unique necrosis is characterized by the exchange of monovalent ions, a restrained ATP supply, redox disorder and a final membrane rupture as main features. Real-time monitoring of metabolic and redox causality during the whole process in living cells has been technically challenging. To bridge this gap, we integrate an advanced toolset of genetically encoded fluorescent sensors to monitor monovalent ions, energy metabolites, and redox equivalents with high spatiotemporal resolution. By directing these sensors to specific subcellular compartments, we successfully capture the real-time choreography of potassium loss specifically induced by NC1 via TRPM4. Furthermore, we establish a precise detection paradigm for evaluating energy currency by integrating sensors for NADH and ATP that are capable of subcellular imaging. We observe general and rapid NADH accumulation along with an ATP shortage in the mitochondria and cytosol. A concomitant reduction in mitochondrial oxidative stress is observed. This study not only elucidates the metabolic progression of a peculiar type of necrosis but also establishes a robust methodological framework for applying genetically encoded sensors to broader physiological and toxicological research.

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Acta Biochimica et Biophysica Sinica•2026

L-arginine synergistic with 5-fluorouracil intervenes in DNA damage repair via the DNA-PKcs/ATM/ATR pathway in hepatocellular carcinoma cells

Authors: Han Wang, Huaxia Xie, Yuan Lin, Zhixin Zhang, Miaoqi Zhang, Junjie Zhao, Qingzan Zhao, Ling Liu

DNA damage repair is a critical physiological process. The combined treatment of L-arginine (L-Arg) and 5-fluorouracil (5-FU) significantly inhibits cell proliferation, enhances nitric oxide (NO) production via inducible nitric oxide synthase (iNOS), and promotes the accumulation of reactive oxygen species (ROS). This heightened oxidative stress triggers DNA damage and apoptosis, as evidenced by a substantial increase in the Bax/Bcl-2 ratio; the activation of caspase-9, caspase-3, and PARP cleavage; and increased level of phosphorylated p53. Moreover, the combination treatment induces G2/M phase arrest, with a significant increase in p-H2AX (Ser 139) (known as Îł-H2AX) expression, indicating extensive DNA damage. Mechanistically, the combined treatment modulates DNA damage response pathways by downregulating DNA-PKcs. Concurrently, it enhances the phosphorylation of ATM, ATR, CHK1, CHK2, and BRCA1. Additionally, the L-Arg and 5-FU combination downregulates PI3K/AKT signaling. AZD-7648 (a DNA-PKcs inhibitor) and LY294002 (a PI3K inhibitor) enhance p-ATM and p-ATR activation, resulting in elevated apoptosis and increased Îł-H2AX expression. In contrast, the inhibition of ATM/ATR by CGK733 suppresses this response, reducing apoptosis and DNA damage signaling. Additionally, the ROS scavengers NAC and iNOS, when applied separately, restore p-AKT and DNA-PKcs expression; suppress the upregulation of p-ATM, p-ATR, and Îł-H2AX; and ultimately reduce apoptosis. These findings are validated in a DEN-induced rat liver cancer model. In summary, 5-FU and L-Arg synergistically increase iNOS/NO-driven ROS accumulation, inducing Îł-H2AX-marked DNA damage through dual modulation of repair pathways (inhibiting PI3K/AKT/DNA-PKcs while activating ATM/ATR), ultimately triggering p53-mediated G2/M arrest and apoptosis in hepatocellular carcinoma cells.

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Acta Biochimica et Biophysica Sinica•2026

TMEM16A inhibition suppresses melanoma metastasis

Authors: Na Zhou, Chuangxin Pei, Xue Lu, Peng Shi, Siqi Wu, Huaqun Chen

As a highly aggressive malignancy arising from melanocytes, malignant melanoma accounts for the majority of skin cancer-related deaths worldwide. Metastases, particularly lung and brain metastases, contribute significantly to mortality. Although targeted therapy (BRAF/MEK inhibitors) and immunotherapy (checkpoint inhibitors) have greatly improved the overall survival of patients, drug resistance and toxicity remain major clinical challenges. Therefore, exploring new approaches to combat melanoma metastasis is imperative. Melanoma metastasis involves multiple processes, including phenotype switching (epithelial-mesenchymal transition, EMT), migration, invasion and infiltration. Phenotype switching occurs at the early stage of metastasis and is characterized by the downregulation of epithelial markers (e.g., E-cadherin) and the upregulation of mesenchymal markers (e.g., N-cadherin and Vimentin). Metastasis depends on highly regulated and complex remodeling of the tumor microenvironment formed by cells as well as by biochemical and biophysical components of the extracellular matrix (ECM) and their intricate interactions within and around a solid tumor mass. These processes are primarily mediated by the altered expression of metastasis-associated genes, and targeting the expression of these genes may be a promising strategy for inhibiting melanoma metastasis. TMEM16A (also known as ANO1), a calcium-activated chloride channel (CaCC) localized to the plasma membrane and organelle membranes, is widely expressed in tissues such as airways, smooth muscles, and neurons, where it plays important physiological roles in regulating smooth muscle contraction and chloride ion secretion. Growing evidence indicates that TMEM16A is overexpressed in various cancers and contributes to tumor progression by increasing cell proliferation, invasion, and metastasis. The expression level of TMEM16A is closely related to tumor size and differentiation, is associated with advanced stage and poor prognosis, and can even be used as a biomarker for certain malignant tumors. We previously observed a high expression level of TMEM16A in a human melanoma cell line, A375, which harbors a BRAF V600E mutation, and demonstrated its role in promoting tumor growth. Here, we further showed that elevated TMEM16A expression contributes to melanoma metastasis.

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Acta Biochimica et Biophysica Sinica•2026

Breakthrough in Komagataella phaffii cell-free protein synthesis: AOX1 promoter drives T7-independent expression efficiently

Authors: Yu Zhang, Wenjie Cong, Hualan Zhou, Jianguo Zhang

This study develops a cell-free protein synthesis (CFPS) system based on the endogenous alcohol oxidase 1 promoter in Komagataella phaffii. The system avoids the dependence of the T7 promoter, thus eliminating the cost issues associated with the T7 RNA polymerase-dependent system in traditional CFPS systems. By integrating an alcohol oxidase 1 promoter-driven GFP expression cassette with optimized K. phaffii cell extract, key components are optimized via a one-factor-at-a-time experiment and a deterministic screening design. This study demonstrates that potassium glutamate and magnesium glutamate have a significant synergistic effect on this system. After optimization, the system achieves a GFP yield of 596.0 mg/L, providing a new record for GFP expression in K. phaffii CFPS systems. This work provides an important theoretical foundation for the further development of T7-independent K. phaffii CFPS systems and their potential applications in scalable bioproduction.

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Acta Biochimica et Biophysica Sinica•2026

Establishment and evaluation of a stable CHO cell line in which the nanobody PD-L1-Fc gene is precisely targeted into the C12orf35 locus

Authors: Feng Chang, Chen Zhang, Yu Feng, Wenyun Zheng, Xingyuan Ma

Chinese hamster ovary (CHO) cells are an extensively used platform for manufacturing biopharmaceuticals, and nearly 80% of recombinant protein is produced by CHO cell lines. Randomly incorporating genes of interest into the genome is a common method for the development of stable CHO cell lines in industry, but it is vulnerable to genetic instability, is difficult to predict productivity, and is accompanied by a time-consuming and laborious screening process. Nonetheless, highly productive clones isolated from a randomized pool often exhibit unfavorable properties including transgene copy number loss and epigenetic silencing over the lifespan of the culture, ultimately lowering transgene transcription and corresponding recombinant protein production, which referred to as production instability. Thus, this challenging situation underscores the urgent desire for a new strategy to satisfy ever-growing industrial production requirements. The lack of specificity of gene integration, which is often susceptible to genetic instability, causes production instability. Alternatively, in recent years, many investigators have shown that the bottleneck arising from traditional randomized cell line development can be overcome through site-specific integration to insert exogenous pieces of DNA into a precise location, which permits their predictable function, allows high levels of transgene expression and makes it possible to generate homogeneous clones with consistent productivity and stability. The transcription and expression activities of genes are influenced by chromatin structural properties and the environment surrounding the genome, and loci that are capable of facilitating high and stable transgene transcription and expression are termed 'hotspots'. Many significant upfront advances have been made to identify potential hotspots, and a number of promising genome loci have been reported, such as the Hprt, Ywhae, Hipp11, Rosa26, and C12orf35 loci. The C12orf35 gene is located on a telomeric region of chromosome 8 in CHO cells. It is widely known that telomeres are usually noncoding, repetitive sequences distributed at chromosome terminals that act as buffers for those coding sequences further behind and thus enable foreign gene expression without interrupting functional genes. Studies have demonstrated that the C12orf35 gene is a potential locus for the integration of foreign genes in mammalian cells and that disruption of C12orf35 gene expression leads to increased productivities and shorter recovery times during selection pressure in CHO cells. Although the C12orf35 gene has been partially researched in cell line development, very few publicly available reports have systematically validated site-specific integration in cell lines concerning the stability of transgene passage, transgene transcription and expression levels. A range of studies have successfully utilized site-specific recombinase or genome editing tools to incorporate exogenous genes into the desired site in the CHO genome. Clustered regularly interspaced short palindromic repeats/Cas9 (CRISPR-Cas9), a leading gene editing tool, uses a guide RNA to target the DNA sequence with the Cas9 enzyme to induce cuts and allows easy, efficient and cost-effective edting. CRISPR-Cas9 has already been applied to mediate the insertion of targeted genes in mammalian cells, including CHO cells, for fundamental research. However, the adoption of this technology for industrial purposes remains to be investigated. Therefore, in this study, we sought to establish a CRISPR/Cas9-mediated site-specific integration strategy to overcome existing weaknesses and lay the foundation for the development of industrial rCHO cell lines.

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Chinese Journal of Tissue Engineering Research•2025

AAV-Mediated Expression of p65shRNA and Bone Morphogenetic Protein 4 Synergistically Enhances Chondrocyte Regeneration

Authors: YU Yangyi, SONG Zhuoyue, LIAN Qiang, DING Kang, LI Guangheng

BACKGROUND: Adeno-associated virus (AAV) gene therapy has been proven to be reliable and safe for the treatment of osteoarthritis in recent years. However, given the complexity of osteoarthritis pathogenesis, single gene manipulation for the treatment of osteoarthritis may not produce satisfactory results. Previous studies have shown that nuclear factor ÎşB could promote the inflammatory pathway in osteoarthritic chondrocytes, and bone morphogenetic protein 4 (BMP4) could promote cartilage regeneration. OBJECTIVE: To test whether combined application of AAV-p65shRNA and AAV-BMP4 will yield the synergistic effect on chondrocytes regeneration and osteoarthritis treatment. METHODS: Viral particles containing AAV-p65-shRNA and AAV-BMP4 were prepared. Their efficacy in inhibiting inflammation in chondrocytes and promoting chondrogenesis was assessed in vitro and in vivo by transfecting AAV-p65-shRNA or AAV-BMP4 into cells. The experiments were divided into five groups: PBS group; osteoarthritis group; AAV-BMP4 group; AAV-p65shRNA group; and BMP4-p65shRNA 1:1 group. Samples were collected at 4, 12, and 24 weeks postoperatively. Tissue staining, including safranin O and Alcian blue, was applied after collecting articular tissue. Then, the optimal ratio between the two types of transfected viral particles was further investigated to improve the chondrogenic potential of mixed cells in vivo. RESULTS AND CONCLUSION: The combined application of AAV-p65shRNA and AAV-BMP4 together showed a synergistic effect on cartilage regeneration and osteoarthritis treatment. Mixed cells transfected with AAV-p65shRNA and AAV-BMP4 at a 1:1 ratio produced the most extracellular matrix synthesis (P < 0.05). In vivo results also revealed that the combination of the two viruses had the highest regenerative potential for osteoarthritic cartilage (P < 0.05). In the present study, we also discovered that the combined therapy had the maximum effect when the two viruses were administered in equal proportions. Decreasing either p65shRNA or BMP4 transfected cells resulted in less collagen II synthesis. This implies that inhibiting inflammation by p65shRNA and promoting regeneration by BMP4 are equally important for osteoarthritis treatment. These findings provide a new strategy for the treatment of early osteoarthritis by simultaneously inhibiting cartilage inflammation and promoting cartilage repair.

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Acta Biochimica et Biophysica Sinica•2025

miR-199a-3p suppresses Vldlr expression to promote cardiomyocyte proliferation

Authors: Rui Jiang, Lijuan Pei, Hongjie Zhang, Fenglian He, Yuhan Min, Xinhang Li, Ke Wei

The proliferative capacity of cardiomyocytes is limited in adult mammals, and replacing lost tissue following acute ischemic injury is challenging. Previous studies have demonstrated that miR-199a-3p can promote cardiomyocyte proliferation, but the exact mechanism by which this occurs remains unclear, although multiple targets of miR-199a-3p have been identified. We recently showed that very-low-density-lipoprotein receptor (Vldlr) inhibits cardiomyocyte proliferation, and in this study we aim to test whether Vldlr is a functional target gene of miR-199a-3p. 3′UTR reporter assays demonstrate that miR-199a-3p directly binds to the 3′UTR of Vldlr and inhibits its translation. Overexpressing Vldlr blunts the pro-proliferative effect of miR-199a-3p on cardiomyocytes, suggesting that Vldlr is indeed a functional target of miR-199a-3p. Mechanistically, Vldlr reduces S807/811 phosphorylation of RB1, and inhibiting CDK4/6 to prevent RB1 phosphorylation can block the pro-proliferative effect of both Vldlr knockdown and miR-199a-3p, suggesting that RB1 phosphorylation is required for the cardiomyocyte proliferation induced by miR-199a-3p and Vldlr knockdown. The findings of this study reveal Vldlr as a novel functional target of miR-199a-3p in cardiomyocytes and identify RB1 as a downstream effector of cardiomyocyte proliferation. The identification of the role of the miR-199a-3p-Vldlr-RB1 axis in cardiomyocyte proliferation may provide potential therapeutic targets for cardiac regenerative medicine.

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Chinese Journal of New Drugs•2025

Research on the Application of Nuclear Magnetic Resonance Technology in the Evaluation of Fracturing Effect of Coalbed Methane Wells

Authors: Zhang, Wei; Li, Yang; Wang, Jun; Liu, Hong

Nuclear magnetic resonance (NMR) technology has been widely used in the evaluation of coalbed methane (CBM) reservoirs. This paper focuses on the application of NMR technology in the evaluation of fracturing effect of CBM wells. Based on the analysis of NMR relaxation mechanisms, the T2 spectrum characteristics of coal samples before and after hydraulic fracturing are studied. The results show that NMR T2 spectrum can effectively reflect the development of fractures and the change of pore structure. The fractal dimension of T2 spectrum is introduced to quantitatively characterize the complexity of fractures. Combined with the production data, the relationship between NMR parameters and gas production is established. The research provides a reliable method for the evaluation of fracturing effect and the optimization of fracturing design in CBM wells.

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Chinese Journal of New Drugs•2025

Influence of Arbuscular Mycorrhizal Fungi on Soil Aggregation and Carbon Sequestration in a Reclaimed Mining Area

Authors: H. Wang, L. Zhang, Y. Li, X. Chen

Arbuscular mycorrhizal fungi (AMF) play a crucial role in soil aggregation and carbon sequestration, yet their impact in reclaimed mining areas remains underexplored. This study investigated the effects of AMF inoculation on soil aggregate stability, organic carbon fractions, and glomalin-related soil protein (GRSP) content in a reclaimed coal mine site. Field experiments were conducted over two years with treatments including AMF inoculation, organic amendment, and a control. Results showed that AMF inoculation significantly increased macroaggregate formation and stability, enhanced soil organic carbon (SOC) and GRSP concentrations, and improved the proportion of recalcitrant carbon pools. The combined application of AMF and organic amendment yielded the highest improvements, with SOC increasing by 32% and aggregate stability by 45% compared to control. These findings highlight the potential of AMF-based bioremediation for accelerating soil restoration and carbon sequestration in degraded mining landscapes, offering a sustainable strategy for ecological rehabilitation.

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Stem Cell Research & Therapy•2025

Mesenchymal stem cell therapy for end-stage liver disease: adversity and opportunity

Authors: Shiqi Li, Yichen Wang, Su-meng Li, Yaxin Zhu, Yan-qin Du, Xin Zheng, Jun Wu

End-stage liver disease (ESLD) is one of the predominant diseases contributing to high morbidity and mortality worldwide, with etiologies including alcoholic liver disease, viral hepatitis, non-alcoholic fatty liver disease, and metabolic-associated liver disease. Currently, liver transplantation remains the only effective treatment, however, its clinical application is significantly limited by donor shortages, immune rejection, and high medical costs. Among the five types of stem cells that have been experimentally applied to liver diseases, mesenchymal stem cells (MSCs) have emerged as the most extensively studied, with the largest number of experimental and clinical research platforms worldwide. This review compiles findings from 25 preclinical and clinical studies on MSCs in the treatment of ESLD, aiming to elucidate the core mechanisms of action and then outline both the challenges in MSC clinical translation and the novel opportunities arising from cutting-edge research.

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Acta Biochimica et Biophysica Sinica•2025

Anthocyanins and flavonoids derived from Clitoria ternatea L. flower inhibit bladder cancer growth via suppressing fatty acid synthesis mediated by SREBP1 pathway

Authors: Chenkai Liu, Jue Liu, Gao Liu, Yusong Song, Xiuyu Yang, Honglei Gao, Cheng Xiang, Jie Sang, Tianrui Xu, Jun Sang

Clitoria ternatea L. flowers are used as traditional herbal medicines and are known for their advanced pharmacological activities. Flavonoids and anthocyanins reportedly contribute to the therapeutic properties of C. ternatea flowers; however, their potential anti-bladder cancer effects and molecular mechanisms remain unknown. In this study, flavonoid- and anthocyanin-rich samples from C. ternatea flowers (DDH) are prepared via macroporous resin-based extraction coupled with an efficient and reliable two-dimensional UPLC-DAD-MS/MS method. In vitro and in vivo studies reveal that DDH can inhibit bladder cancer cell growth and enhance the anti-bladder cancer activity of cisplatin. RNA-seq combined with KEGG analysis reveals that fatty acid synthesis is closely related to the anti-bladder cancer effect of DDH. Furthermore, DDH dose-dependently reduces cellular fatty acid levels in bladder cancer cells, and the addition of fatty acids significantly mitigates DDH-induced cell growth inhibition. Subsequent findings reveal that DDH downregulates sterol regulatory element-binding protein 1 (SREBP1), a key transcriptional regulator of de novo fatty acid synthesis in cancer cells, and its downstream targets (FASN, SCD1, and ACC). Additionally, this study demonstrates that gallic acid not only enhances the stability of DDH but also synergistically potentiates its anti-bladder cancer activity. Our study suggests that targeting the SREBP1 pathway is an effective strategy in bladder cancer therapy, and the ability of DDH to induce cell death by inhibiting the SREBP1 pathway and its good tolerance in mice make it a promising strategy for preventing and treating bladder cancer.

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Acta Biochimica et Biophysica Sinica•2025

Cellular functions and biomedical applications of circular RNAs

Authors: Zheyu Zhang, Zefeng Wang

Circular RNAs (circRNAs) have emerged as a large class of stable and conserved RNAs that are derived primarily from back-splicing of pre-mRNAs and expressed in a cell- and tissue-specific fashion. Recent studies have indicated that a subset of circRNAs may undergo translation through cap-independent pathways mediated by internal ribosome entry sites (IRESs), m6A modifications, or IRES-like short elements. Considering the stability and low immunogenicity of circRNAs, in vitro transcribed circRNAs hold great promise in biomedical applications. In this review, we briefly discuss the noncoding and coding functions of circRNAs in cells, as well as the methods for the in vitro synthesis of circRNAs and current advances in the applications of circRNAs in biomedicine.

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Acta Biochimica et Biophysica Sinica•2025

Functions and applications of RNA interference and small regulatory RNAs

Authors: Xuezhu Feng, Shouhong Guang

Small regulatory RNAs play a variety of crucial roles in eukaryotes, influencing gene regulation, developmental timing, antiviral defense, and genome integrity via a process termed RNA interference (RNAi). This process involves Argonaute/small RNA (AGO/sRNA) complexes that target transcripts via sequence complementarity and modulate gene expression and epigenetic modifications. RNAi is a highly conserved gene regulatory phenomenon that recognizes self- and non-self nucleic acids, thereby defending against invasive sequences. Since its discovery, RNAi has been widely applied in functional genomic studies and a range of practical applications. In this review, we focus on the current understanding of the biological roles of the RNAi pathway in transposon silencing, fertility, developmental regulation, immunity, stress responses, and acquired transgenerational inheritance. Additionally, we provide an overview of the applications of RNAi technology in biomedical research, agriculture, and therapeutics.

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Acta Biochimica et Biophysica Sinica•2025

Small molecules enhance the high-efficiency generation of pancreatic ductal organoids

Authors: Yuwei Liao, Zhifan Lin, Siyu Li, Xiaolei Yin

Advancements in three-dimensional (3D) organoid cultures have created more physiologically relevant models for pancreatic disease research, but efficiently generating mature pancreatic ductal cells remains challenging. In this study, we develop a novel protocol to generate pancreatic ductal organoids (PDOs) with high initiation efficiency and an enrichment of pancreatic ductal cells. By utilizing a cocktail of small molecules, we optimize the culture conditions to improve organoid formation. Our findings demonstrate that this protocol facilitates the formation and expansion of PDOs derived from Sox9-positive ductal cells, including heterogeneous ductal cells and acinar cells. These organoid cultures exhibit remarkable stability, supporting long-term expansion. This system provides an efficient model with potential applications in high-throughput drug screening. Moreover, these organoids recapitulate the exocrine cell composition and may reflect the cellular plasticity between ductal and acinar cells, providing a valuable platform for investigating pancreatic diseases such as pancreatic ductal adenocarcinoma (PDAC). The model presents a promising tool for future research aimed at understanding disease mechanisms and potentially helping drug development for pancreatic disorders.

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Genomics, Proteomics & Bioinformatics•2024

Correction to: dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms

Authors: Feng Xu, Yifan Wang, Yunchao Ling, Chenfen Zhou, Haizhou Wang, Andrew E. Teschendorff, Yi Zhao, Haitao Zhao, Yungang He, Guoqing Zhang, Zhen Yang

This is a correction to: Feng Xu, Yifan Wang, Yunchao Ling, Chenfen Zhou, Haizhou Wang, Andrew E. Teschendorff, Yi Zhao, Haitao Zhao, Yungang He, Guoqing Zhang, Zhen Yang, dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms, Genomics, Proteomics & Bioinformatics, Volume 20, Issue 3, June 2022, Pages 446–454, https://doi.org/10.1016/j.gpb.2022.04.006. The published version of this manuscript contained errors in the author affiliation listings. The corrected affiliations are as follows: Feng Xu1,#, Yifan Wang2,#, Yunchao Ling2, Chenfen Zhou2, Haizhou Wang1, Andrew E. Teschendorff3, Yi Zhao4, Haitao Zhao5, Yungang He6,*, Guoqing Zhang2,*, Zhen Yang1,* 1 Center for Medical Research and Innovation of Pudong Hospital, Fudan University Pudong Medical Center, and Shanghai Key Laboratory of Medical Epigenetics, International Co-laboratory of Medical Epigenetics and Metabolism (Ministry of Science and Technology), Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, China 2 Bio-Med Big Data Center, CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai 200031, China 3 CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai 200031, China 4 Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China 5 Department of Liver Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100730, China 6 Shanghai Fifth People’s Hospital, and Shanghai Key Laboratory of Medical Epigenetics, International Co-laboratory of Medical Epigenetics and Metabolism (Ministry of Science and Technology), Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, China These details have been corrected only in this correction notice to preserve the published version of record.

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Stem Cell Research & Therapy•2024

Correction: Radiochemotherapy-induced DNA repair promotes the biogenesis of gastric cancer stem cells

Authors: Yu Lu, Xiaobo Zhang

This correction article addresses an inadvertent error in the original publication. In Fig. 5M of the original article, the image of the fourth lane (LEF-1) of the second picture (Doxorubicin-induced GCSCs) was inadvertently replaced with an incorrect version during the upload process. The authors wish to note a correction to the aforementioned picture via the corrected picture ahead in this Correction article. The authors deeply regret that this error occurred and sincerely apologize for any inconvenience.

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Acta Biochimica et Biophysica Sinica•2024

Hepatitis E virus infection upregulates ING5 expression in vitro and in vivo

Authors: Wanqiu Zhao, Yueping Xia, Tengyuan Li, Huichan Liu, Guo Zhong, Dongxue Chen, Wenhai Yu, Yunlong Li, Fen Huang

Hepatitis E virus (HEV) is the major pathogen of viral hepatitis. Immunocompromised individuals infected by HEV are prone to chronic hepatitis and increase the risk of hepato-cellular carcinoma (HCC). Inhibitor of growth family member 5 (ING5) is a tumor suppressor that is expressed at low levels in cancer tumors or cells. However, the underlying relationship between ING5 and HEV infection is unclear. In the present study, acute and chronic HEV animal models are used to explore the interaction between ING5 and HEV. Notably, the expression of ING5 is significantly increased in both the livers of acute HEV-infected BALB/c mice and chronic HEV-infected rhesus macaques. In addition, the relationship between HEV infection and ING5 expression is further identified in human hepatoma (HepG-2) cells. In conclusion, HEV infection strongly upregulates ING5 expression both in vivo and in vitro, which has significant implications for further understanding the pathogenic mechanism of HEV infection.

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Acta Biochimica et Biophysica Sinica•2024

Identification of the interaction between MAPK1 and Eimeria acervulina serine protease inhibitor: a preliminary functional study

Authors: Liyin Lian, He Sun, Jing Wang, Wanjing Li, Yifan Sheng, Xinyue Gong, Qian Sun, Pu Wang, Yadong Zheng, Houhui Song

Eimeria spp. can invade different intestines of chickens. Among them, Eimeria acervulina (E. acervulina, Ea) is the most virulent, and it is characterized by disruption of the intestinal nutrient uptake mechanism, leading to weight loss and even death. As a result, coccidia have caused a heavy burden on the poultry industry [1]. Currently, understanding the invasion mechanism of E. acervulina in host cells is the basis for developing the most effective preventive method for coccidiosis. However, the specific mechanism of E. acervulina invasion is unclear, so the interactions between parasite and host cells need to be studied in depth. Serine thiol proteinase inhibitors widely exist in bacteria, viruses and parasites. It can protect against the dissolution of host proteins and the development of pathogens in the process of pathogen invasion [2]. The serine protease inhibitor (SERPIN) of Toxoplasma gondii, which has the ability to inhibit trypsin activity, was the first SERPIN to be studied in parasites. SERPIN in T. gondii may play an important role in protecting against the degradation of host intestinal proteases and reducing the ability of host proteins to hydrolyse T. gondii [3]. SERPIN in T. gondii can also promote the growth of tachyzoites in the host. Subsequently, a 79-amino acid protease inhibitor, SERPIN, which can completely inhibit the activity of bacterial subtilisin, was found in Neospora caninum [4]. SERPIN plays an important role not only in parasite physiology but also in the interactions with the host. Real-time quantitative PCR analysis at all developmental stages of E. tenella showed that SERPIN1 is highly expressed in sporozoites [5]. Previous studies have shown that the secreted SERPIN protein in sporozoites may also regulate the host immune pathway. In Schistosoma mansoni, SERPIN can inhibit neutrophil proteases and regulate the degradation of tissues to promote the migration of parasites in the host [6]. SERPIN secreted by parasites can also be used to protect themselves from degradation by host proteases, thus manipulating the host response to parasites. Studies have shown that they are mainly involved in physiological processes such as blood sucking, digestion, reproduction and immune response and affect the interaction between parasites and hosts [7]. SERPIN from Trichinella spiralis (TsSPI) is not directly involved in the growth and reproduction of parasites but regulates the interaction between T. spiralis and its host to a certain extent. TsSPIs can regulate the polarization of macrophages and subsequently affect the balance among host inflammatory factors to regulate the host immune response and create a favorable environment for the colonization of Trichinella spiralis in the host [8]. Taeniasis solium SERPIN can play a biological role by participating in the inflammatory and apoptotic pathways of the host [9]. Previous studies have shown that SERPIN plays important roles during host-cell invasion, and 66 related proteins that interact with E. tenella SERPIN on the host have been preliminarily screened [10]. However, few studies have focused on the binding partner of Ea-SERPIN. To identify the ligand-binding partner molecules that may play an important role in the invasion process of E. acervulina, a yeast two-hybrid system was used to screen the associated proteins from the yeast complementary DNA (cDNA) library of chicken duodenal epithelium cells using Ea-SERPIN as bait. In this study, a close genetic relationship was identified between E. acervulina and E. maxima and between E. acervulina and T. gondii. The protein homology of SERPIN between E. acervulina and E. maxima was 87%, and that between E. acervulina and Toxoplasma gondii was 43% (Supplementary Figure S1). The yeast cDNA library of chicken duodenal epithelium cells in the pGADT7 vector was constructed using a Matchmaker Library Construction and Screening kit (Clontech, Palo Alto, USA) as the prey. Preys containing a Gal4 activation domain (AD prey) were transformed into the yeast strain Y187. The efficiency of transformation and the size of the insert fragment satisfied the quality requirements of the yeast library. For yeast two-hybrid screening, SERPIN was amplified by polymerase chain reaction (PCR) using the forward primer 5′-CCC CATATGATGGCATTATTAAGTAAATTAACTCG-3′ and the reverse primer 5′-CCCCTGCAGTTACTGCTGTGCAGCTGTCGGGTCAG-3′ from E. acervulina cDNA and then ligated into the NdeI-PstI sites of pGBKT7 as a bait. The recombinant plasmid was transformed into Y2H GOLD yeast cells, and the transformants were separately grown on plates containing minimal yeast medium without tryptoph

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Acta Biochimica et Biophysica Sinica•2024

ATIP/ATIP1 regulates prostate cancer metastasis through mitochondrial dynamic-dependent signaling

Authors: Haokun Yuan, Ruiqin Fang, Chi Fu, Shuo Wang, Xiaoqin Tong, Deyi Feng, Xiaoqing Wei, Xirong Hu, Yuan Wang

Mitochondria play a fundamental role in cell survival and motility. Abnormalities in mitochondria are associated with carcinogenesis, especially with tumor metastasis. In this study, we explore the biological function of ATIP1, which is a mitochondrial-located isoform of angiotensin II AT2 receptor interacting proteins (ATIPs) in prostate cancer cells. The results showed that ATIP is downregulated in prostate cancer tissues and is negatively correlated with the disease-free survival rate of prostate cancer patients. Silencing of ATIP promotes mitochondrial fission and enhances tumor cell migration and invasion. Reconstitution of ATIP1 in ATIP-deficient cells significantly attenuates mitochondrial trafficking and tumor cell movement. Therefore, ATIP1 is a negative regulator of mitochondrial dynamics and tumor cell motility and is also a potential biomarker for predicting prostate cancer malignancy.

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