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Wuhan University

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Chinese Journal of Tissue Engineering Research2026

Mechanisms by which exercise regulates gut microbiota in the prevention and treatment of non-alcoholic fatty liver disease

Authors: WANG Wei, CHEN Jun, JIA Shaohui, XUE Xinxuan, DONG Kunwei

BACKGROUND: The pathogenesis of non-alcoholic fatty liver disease is closely associated with gut microbiota dysbiosis. In recent years, accumulating evidence has indicated that exercise may exert beneficial effects on host metabolic homeostasis by modulating the composition and function of the gut microbiota, thereby playing a positive role in the prevention and treatment of non-alcoholic fatty liver disease. OBJECTIVE: To systematically summarize current research progress on the interplay between gut microbiota and non-alcoholic fatty liver disease, to further elucidate the regulatory effects of exercise on gut microbiota, and to explore in depth the potential mechanisms by which exercise intervention may prevent or ameliorate non-alcoholic fatty liver disease via the "gut–liver axis." METHODS: Search terms included "non-alcoholic fatty liver disease," "gut microbiota," "exercise," "bile acid," "short-chain fatty acid," "lipopolysaccharide," "trimethylamine oxide," and "indole" in Chinese and English, respectively. China National Knowledge Infrastructure (CNKI), and WanFang Database were searched for relevant studies published up to March 2025. A total of 85 core studies were identified based on the inclusion and exclusion criteria. RESULTS AND CONCLUSION: (1) The composition of gut microbiota in patients with non-alcoholic fatty liver disease is significantly abnormal, with increased abundance of pro-inflammatory bacteria (such as Proteobacteria, Escherichia coli, and Streptococcus) and pathogenic bacteria (such as Enterobacteriaceae), while the abundance of anti-inflammatory and homeostatic bacteria (such as Ruminococcus and Faecalibacterium) is decreased. These adverse changes in microbial composition may promote the entry of metabolites into the liver by increasing intestinal permeability, activating inflammatory pathways, and increasing endogenous ethanol production, thereby driving the pathological progression of non-alcoholic fatty liver disease. (2) Modulating gut microbiota through probiotic supplementation or fecal microbiota transplantation can effectively reduce transaminase levels and chronic inflammation in patients with non-alcoholic fatty liver disease, suggesting that gut microbiota may be an important target for the prevention and treatment of non-alcoholic fatty liver disease. (3) Exercise can regulate gut microbiota composition, increase the abundance of beneficial bacteria, reduce the abundance of pro-inflammatory bacteria, and promote the activation of key metabolic pathways, thereby improving host metabolic health. However, current research on the effects of exercise on gut microbiota in patients with non-alcoholic fatty liver disease remains relatively limited, especially the effects and mechanisms of different exercise types, intensities, and durations on gut microbiota and host metabolism are still unclear. (4) Exercise may regulate gut microbiota and increase short-chain fatty acid production to activate G protein-coupled receptors 41/43 and AMP-activated protein kinase pathways, inhibit histone deacetylase activity, thereby reducing hepatic fat accumulation, alleviating liver inflammation, and decreasing insulin resistance; exercise may regulate the gut microbiota-bile acid axis to improve bile acid metabolism, thereby mediating the farnesoid X receptor/G protein-coupled bile acid receptor 5 signaling pathway to prevent and treat non-alcoholic fatty liver disease; exercise may reshape gut microbiota to reduce the abundance of lipopolysaccharide-containing Gram-negative bacteria and improve intestinal barrier function to reduce lipopolysaccharide production and translocation, preventing and treating non-alcoholic fatty liver disease; exercise may regulate gut microbiota composition to enhance the synthesis of indole and its derivatives, while inhibiting the production of ethanol and trimethylamine oxide, thereby enhancing liver metabolic capacity, improving intestinal barrier function, and reducing liver inflammation, playing a positive role in the prevention and treatment of non-alcoholic fatty liver disease.

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Chinese Journal of Tissue Engineering Research2026

X-ray imaging and finite element analysis of the L6-S1 intervertebral disc in rats under abnormal forward-flexed posture

Authors: HE Miao, WU Gang, ZHANG Xuxing

BACKGROUND: Our group developed a rat lumbar spine model inducing L6-S1 segmental degeneration by prolonged fixation in an abnormal forward-bending posture through a specific device. However, biomechanical evaluation of this model remains lacking. OBJECTIVE: To evaluate the biomechanical properties of L6-S1 motion segment in rats with abnormal forward bending posture through X-ray verification and finite element analysis. METHODS: This study utilized a previously established SD rat model of abnormal forward-flexed posture. Lateral X-ray images of three healthy female SD rats were taken in both restrained (unanesthetized) and relaxed (anesthetized) states to measure the L6-S1 disc angle and analyze its changes under different postures. Micro-CT data from one healthy female SD rat were used to reconstruct a 3D L6-S1 model with Mimics, Geomagic Wrap, and SolidWorks. The model was then meshed, assigned material properties, and subjected to forward flexion loading simulation in ANSYS Workbench to calculate stress distribution in L6-S1 disc structures. RESULTS AND CONCLUSION: (1) The mean L6-S1 intervertebral disc angle was (12.16±0.57)° in relaxed posture and (1.26±0.26)° in restrained posture. (2) Under 10° forward flexion, the maximum von Mises stresses in the upper endplate, lower endplate, annulus fibrosus, and nucleus pulposus were 10.398, 19.928, 6.819, and 0.104 MPa, respectively, with endplates showing significantly higher stresses. (3) The forward-flexed posture reduced the L6-S1 disc angle, altering disc morphology and load distribution. The finite element model simulated the biomechanical environment under abnormal posture, indicating that endplates may be the earliest structures to undergo degenerative changes.

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Chinese Journal of Tissue Engineering Research2026

Research context and trend of TANK binding kinase 1 in autoimmunity and tumor prevention and treatment

Authors: Xu Canli, He Wenxing, Wang Yuping, Ba Yinying, Chi Li, Wang Wenjuan, Wang Jiajia

BACKGROUND: The research results on TANK binding kinase 1, a bi-directional tumor regulator, have been increasing yearly, but there is no bibliometric literature to analyze the information in the literature related to TANK binding kinase 1. OBJECTIVE: To explore the research status, hot spots, and trends of TANK binding kinase 1 based on bibliometric analysis. METHODS: We collected literature related to TANK binding kinase 1 in the last 10 years based on the SCIE database in the Web of Science Core Collection. The data were imported into CiteSpace 6.3.R1 and analyzed bibliometrically and visually with five options: country, author, institution, reference, and keyword. In addition, Origin 2021 was used to plot the relevant statistical graphs. RESULTS AND CONCLUSION: There was an upward trend in the number of publications and co-citations involved in TANK binding kinase 1 research. Dan-Dan Chen, Jian-Fang Gui, Qiwei Qin, and Shun Li were the four authors with the highest number of publications (n=11), while the Chinese Academy of Sciences, University of Chinese Academy of Sciences, Zhejiang University, Chinese Academy of Agricultural Sciences, and Wuhan University had a larger number of publications (> 50). The research hot spots of TANK binding kinase 1 in the last decade mainly focus on innate immunity, the cyclic gmp-amp synthase (cGAS)-stimulator of interferon genes (STING) pathway, NF-κB, inflammation, optineurin, expression, and cancer. The results indicate that scholars from various countries have conducted continuous and in-depth research in related fields in recent years, and TANK binding kinase 1 shows great scientific potential in autoimmune systems, signaling pathways, gene expression, and tumor prevention and treatment. However, academic cooperation among scholars and institutions is not close, and future scholars should strengthen cooperation and communication, grasp the research hotspots and trends of TANK binding kinase 1, expand the scope of research in disease fields, and provide more evidence for further elucidating the pharmacological mechanisms and pathological changes of diseases.

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Chinese Journal of Tissue Engineering Research2026

Mechanisms and potential therapeutic strategies for skeletal muscle extracellular matrix aging

Authors: ZHOU Jing, SU Dongming, YANG Dan

BACKGROUND: Skeletal muscle aging has been primarily attributed to cellular dysfunction. Emerging evidence indicates that pathological remodeling of the extracellular matrix (ECM) is a core driver. However, a systematic discussion of ECM pathology and intervention strategies is lacking. OBJECTIVE: To systematically elucidate the pathological changes of the ECM in aged skeletal muscle and construct a vicious cycle model of 'component imbalance → physical stiffening → functional decline'. Based on this model, to review multiple potential intervention strategies targeting the ECM. METHODS: A systematic search of PubMed, Web of Science, Scopus, Embase, Cochrane Library, CNKI, Wanfang Data, and VIP was conducted from inception to September 1, 2025. Following predefined inclusion and exclusion criteria, 70 relevant studies were selected from 4,789 articles for comprehensive analysis and review of the pathological mechanisms and interventions for aged skeletal muscle ECM. RESULTS AND CONCLUSION: (1) Aging transforms the ECM from a functional matrix into an inhibitory fibrotic barrier, with core pathology involving three aspects: ① component imbalance: excessive collagen deposition; ② physical stiffening: accumulation of chemical cross-links (e.g., advanced glycation end products); ③ functional decline: impaired ECM signaling that inhibits muscle regeneration. (2) Targeting this pathological cycle, the authors propose a three-tier intervention framework: Tier 1, restoring dynamic balance and physical properties (e.g., exercise); Tier 2, targeting and eliminating upstream drivers (e.g., senescent cells); Tier 3, functional reconstruction using tissue engineering. (3) Pathological ECM remodeling is a key therapeutic target for muscle aging. The proposed 'pathological cycle-layered intervention' framework deepens the understanding of aging mechanisms and provides direction for future combination therapies and personalized precision medicine.

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Chinese Journal of Tissue Engineering Research2026

Hedgehog signaling pathway and diabetic osteoporosis: a potential target for specific drug therapy

Authors: Tian Tan, Bao Shanjun

BACKGROUND: The Hedgehog signaling pathway has been demonstrated to play a crucial role in osteogenesis, promoting osteoblast differentiation and maturation, maintaining bone metabolic homeostasis, enhancing glucose metabolism, and improving insulin resistance, thereby offering therapeutic potential for both osteoporosis and diabetes. Currently, the primary treatment strategy for diabetic osteoporosis involves a combination of hypoglycemic agents and calcium supplements. However, studies indicate that some antidiabetic drugs may disrupt calcium and phosphate balance, accelerating bone loss. Therefore, identifying effective therapeutic targets for diabetic osteoporosis is imperative. OBJECTIVE: To explore the relationship between Hedgehog signaling pathway activation and diabetic osteoporosis pathogenesis, providing a reference and theoretical basis for the subsequent development of targeted drugs for diabetic osteoporosis. METHODS: Literature on the link between Hedgehog signaling pathway transduction and the pathological mechanism of diabetic osteoporosis published from the inception of PubMed and CNKI databases up to July 2025 was retrieved. Chinese search terms included "diabetic osteoporosis, Hedgehog signaling pathway, osteogenic differentiation, glucose metabolism, Runx2, advanced glycation end products"; English search terms included "diabetic osteoporosis, hedgehog signaling pathway, osteogenic differentiation, glucose metabolism, Runx2, AGEs". A total of 81 articles were included after screening for relevance and avoiding duplication. RESULTS AND CONCLUSION: (1) The prevention and treatment of diabetic osteoporosis requires simultaneous regulation of bone metabolism and glucose metabolism. Activation of the Hedgehog signaling pathway promotes osteoblast differentiation and increases bone mass by initiating transcription of the target gene Runt-related transcription factor 2 and synergistically regulating with the Wnt signaling pathway. (2) Additionally, Hedgehog signaling pathway expression promotes the activation of phosphatidylinositol 3-kinase-protein kinase B and AMP-activated protein kinase signaling pathways, and reduces advanced glycation end products. Activation of these pathways enhances glucose transport and utilization, improving glucose metabolism, while reduced AGEs alleviate stress responses, inhibit pancreatic β-cell apoptosis, and maintain glucose homeostasis.

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Chinese Journal of Tissue Engineering Research2026

Correlation between body mass index and early recovery outcomes after kidney transplantation

Authors: ZHONG Xiaoping, CHEN Dan, XIE Nianhua

BACKGROUND: The proportion of obesity in the Chinese population has increased year by year, but its impact on early renal function recovery after kidney transplantation has not been systematically elucidated, and localized research is urgently needed to provide evidence-based basis. OBJECTIVE: To investigate the effect of different body mass indexes on early renal function recovery in renal transplant recipients after surgery, to analyze the association between body mass index and postoperative creatinine, urine volume and hospital stay, and to propose clinical recommendations for individualized management. METHODS: The clinical data of 495 renal transplant recipients in the Second Xiangya Hospital of Central South University from 2019 to 2020 were retrospectively analyzed. According to the Chinese obesity standard, they were divided into a lean group (body mass index < 18.5 kg/m2, n=78), a normal group (18.5 ≤ body mass index < 24 kg/m2, n=273), an overweight group (24 kg/m2 ≤ body mass index < 28 kg/m2, n=119), and an obese group (body mass index ≥ 28 kg/m2, n=25). The baseline characteristics, postoperative creatinine, urine volume, and hospital stay were compared among the groups. Multivariate regression analysis was used to analyze the independent effect of body mass index on postoperative recovery. RESULTS AND CONCLUSION: (1) The age of the obese group was significantly higher than that of other groups (P < 0.001), the proportion of living donors (0%) was the lowest (P=0.015), the creatinine level on postoperative day 1 and hospital stay were the highest (P < 0.001), and urine volume was the lowest (P < 0.001); (2) Multivariate regression showed that for each 1 kg/m2 increase in body mass index, creatinine on postoperative day 1 increased by 38 μmol/L (β=0.38, P < 0.001), and urine volume decreased by 32 mL (β=-0.41, P < 0.001); (3) It is suggested that elevated body mass index is an independent risk factor for slow early renal function recovery and prolonged hospital stay after kidney transplantation; based on the Chinese obesity standard (body mass index ≥ 28 kg/m2), it is recommended to strengthen perioperative monitoring, optimize immunosuppressive regimens, and formulate individualized fluid management strategies for obese recipients to improve prognosis. This study can provide evidence-based basis for localized body mass index stratified management.

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Chinese Journal of Tissue Engineering Research2026

4D bioprinting for regenerative medicine: a new strategy for intelligent material regulation and tissue regeneration

Authors: Liao Meixi, Wang Zhenxing, Lu Lili

BACKGROUND: 4D printing enables dynamic control of structure and function, allowing constructs to more closely mimic complex physiological environments and driving the development of tissue engineering and regenerative medicine towards intelligence and personalization. OBJECTIVE: To review the role and application advances of 4D printing in tissue engineering and regenerative medicine. METHODS: Relevant literature published between 1994 and 2025 was retrieved from CNKI, WanFang, PubMed, and Web of Science. Chinese and English terms were “4D printing, regenerative medicine, tissue engineering, wound healing, biological ink, intelligent materials.” A total of 115 articles were systematically reviewed and analyzed. RESULTS AND CONCLUSION: 4D bioprinting represents a key advance in tissue engineering and regenerative medicine, integrating diverse fabrication methods and biomaterials to create structures that dynamically respond to environmental cues. 4D bioprinting enhances the biomimicry of natural tissues, enables customized responsiveness, and improves integration with biological systems. 4D bioprinting facilitates the development of tissues and organs, as well as intelligent implants and advanced drug delivery systems, ultimately for tissue repair. 4D bioprinting can seamlessly adapt to the physiological complexity of the human body, apply to personalized medicine, and significantly improve therapeutic outcomes in changing environments.

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Stem Cell Research & Therapy2026

Phenotypic alterations and PI3K-AKT pathway regulation in senescence of human tonsil mesenchymal stem cells

Authors: Xiaoyu Qiu, Zehua Lin, Yuechen Sun, Anbang Zhao, Xiong Chen

Background: Tonsil mesenchymal stem cells (TMSCs) are a promising regenerative medicine source but require continuous subculturing for expansion. Long-term expansion in vitro induces cellular senescence, impairing their function. This study aimed to elucidate senescence-related phenotypic alterations and regulatory mechanisms in human tonsil-derived mesenchymal stem cells. Methods: Human-derived TMSCs were isolated from palatine tonsils, cultured under standard conditions, and characterized for mesenchymal markers. Senescence-associated changes were evaluated across early (P1–P5) and late passages (beyond P10). Proliferation capacity was assessed via CCK-8 assays, while senescence-associated β-galactosidase (SA-β-gal) activity and protein levels of p16, p53, and p21 were quantified. RNA sequencing identified differentially expressed genes (DEGs) between young and senescent TMSCs, followed by KEGG pathway enrichment analysis. Key findings were validated by measuring the p-Akt/Akt ratio via Western blot. Results: TMSCs showed a progressive decline in proliferative capacity with increasing passages. SA-β-gal staining revealed a significantly higher percentage of positive cells in late-passage TMSCs compared to early-passage cells. Expression levels of P16, P53, and P21 proteins were markedly upregulated in aged TMSCs. KEGG analysis of DEGs indicated significant enrichment in the PI3K-Akt signaling pathway, ECM-receptor interaction, and calcium signaling. Consistent with this, Western blot confirmed a significantly increased p-Akt/Akt ratio in senescent TMSCs. Conclusion: Our research proved that replicative senescence in TMSCs is associated with PI3K-Akt pathway activation, which likely orchestrates senescence via p16 and p53-p21 cascades. These findings provide new insights into the mechanisms of stem cell aging and suggest potential molecular targets for developing strategies to delay senescence in TMSCs for regenerative medicine.

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Acta Biochimica et Biophysica Sinica2026

Small chemical molecule CPP promotes angiogenesis in surgically created severe lower limb ischemia and diabetes-induced limb vascular reduction models

Authors: Xinyu Dong, Yangyang Zhang, Congyao Zhao, Xiaomeng Yan, Xiaohui Chi, Xinyu Xie, Baoxiang Zhao, Jian Zhang, Li Wang, Junying Miao, Zhaomin Lin

Patients with peripheral artery disease (PAD) commonly experience chronic limb-threatening ischemia (CLTI) in the end stage, leading to severe functional impairment of the limbs, amputation, and even death. Among the various disease factors contributing to PAD, diabetes is significantly associated with PAD risk, leading to more severe symptoms and a poorer prognosis. Promoting angiogenesis at ischemic sites and improving blood flow are key to the recovery of limbs from ischemic injury. Angiogenic therapies based on cells and small-molecule drugs are considered important and promising strategies. Cell-based therapies can be classified based on cell source into allogeneic therapies and autologous therapies. Autologous cells offer the advantage of not requiring immunosuppression but may be limited by factors such as cell unavailability and scarcity due to autologous factors. Allogeneic cells, while offering a more abundant cell source, present drawbacks, including immune incompatibility and ethical concerns, which restrict their application. Small chemical molecules offer advantages such as convenience, low cost, ease of synthesis and storage, and rapid action without the need for introducing exogenous genes. They circumvent the high costs associated with cell therapies and potential side effects from allogeneic cell transplantation, holding significant promise and potential in both biomedical research and clinical applications. Fibroblasts are a cell type with functional and transcriptional heterogeneity and cellular fate plasticity, making them a promising source of seed cells for clinical tissue and organ repair and regeneration. Small molecules have become recognized as crucial tools for the induction of cellular reprogramming. In our laboratory’s previous research, a novel small chemical molecule probe, CPP ((E)-4-(4-(4-(7-(diethylamino)-2-oxo-2H-chromene-3-carbonyl)piperazin-1-yl)styryl)-1-methylpyridin-1-ium iodide), was identified as an inhibitor of prolyl-4-hydroxylase 2 (PHD2). CPP induces the differentiation of cultured human dermal fibroblasts into vascular endothelial cells (VECs) via the PHD2/hypoxia-inducible factor-1α/hairy-related transcription factor 1 (PHD2/HIF1α/HEY1) signaling pathway. The differentiated VECs exhibited therapeutic efficacy in treating lower limb ischemia in mice, indicating that CPP holds promise as a therapeutic candidate for limb ischemia. In this study, we aimed to investigate the capability of CPP to directly induce angiogenesis in vivo under conditions of vascular injury. Critical limb ischemia (CLI) occurs at the end stage of PAD. To evaluate the in situ therapeutic effects of CPP on CLI, a CLI model was established using C57BL/6 mice (Hubei Research Center of Laboratory Animals, Wuhan, China). CPP was synthesized and provided by the laboratory of Professor Baoxiang Zhao at Shandong University (Jinan, China). Following surgery, continuous subcutaneous multipoint injections of CPP were administered for 14 d to mimic localized drug treatment (Figure 1A). Laser speckle blood flow imaging was used to assess lower limb perfusion on days 0, 7, and 14 (Figure 1B, upper panel). The results showed that by day 7 post-surgery, both CPP concentrations significantly enhanced perfusion in the ischemic limb compared to the control group. From days 7 to 14, perfusion changes in both CPP-treated groups plateaued. Meanwhile, the control group showed increased perfusion. Throughout the treatment period, no significant differences were observed between the 1 and 10 mg/kg/day CPP treatment groups (Figure 1C,D). On day 14, the capillary density in the skin and muscle was significantly higher in the 1 mg/kg/day CPP group than in the control group. Although the 10 mg/kg/day group had a slightly higher density than the control, the difference was not statistically significant (Figure 1E–G). In addition, the organ toxicity

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Acta Biochimica et Biophysica Sinica2026

Biochemical and structural studies of NFIA and NFIC reveal a conserved mechanism for specific DNA recognition and provide insight into potential pathogenicity of disease-associated mutations

Authors: Shuli Pan, Wenjie Pei, Jin Zhang, Jinrong Min, Ke Liu

Nuclear factor I (NFI) transcription factors play essential roles in multiple aspects of nervous system development, including radial glia maturation, neurogenesis, gliogenesis, and brain morphogenesis. Numerous NFI variants have been identified in individuals with neurodevelopmental disorders, yet the molecular basis of their pathogenicity remains unclear. The absence of resolved NFI-DNA complex structures continues to impede mechanistic insights and therapeutic exploration. Here, we define the oligomeric states of NFIA and NFIC, and determine the crystal structures of the NFIC homodimer, as well as the NFIA and NFIC monomers lacking their dimerization region, in complexes with double-stranded DNAs. Structural analysis reveals the molecular mechanism underlying NFI dimerization and recognition of a dyad-symmetric TGGCA(N3)TGCCA sequence motif, and demonstrates that dimerization enhances both DNA-binding affinity and specificity of NFI proteins. The functional importance of key NFI residues and DNA bases involved in the protein-DNA interaction is further validated by mutagenesis and binding assays. Additionally, we systematically evaluate the effects of the neurodevelopmental disorders-associated NFI mutations on DNA binding of NFIA, providing insights into their potential pathogenic mechanisms. Together, our findings elucidate the structural basis of NFI dimerization and dyad-symmetric DNA recognition and highlight pathogenic variants for further mechanistic studies in neurodevelopmental disorders.

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Acta Biochimica et Biophysica Sinica2026

Cancer-specific bivalent promoters featuring low-level H3K27me3 signals favor active transcription and govern the cancer cell state transition

Authors: Fan Yang, Guanlan Fan, Jing Cao, Qiuyan Zhao, Kexiu Guo, Min Liu, Xin Yin, Hongying Zong, Feng Li, Fubing Wang, Jie Xiong

Bivalent chromatin maintains genes in low-expression, poised states in embryonic stem cells (ESCs). However, bivalent promoters correlate with the transcriptional activation of oncogenic programs in malignancies, a seemingly contradiction that remains to be resolved. Here, we identify a class of cancer-specific bivalent promoters (CSBPs) through the integration of a system-level longitudinal framework. Compared with ESCs, CSBPs are characterized by lower and narrower H3K27me3 deposition alongside abundant H3K4me3, thus permitting the persistent expression of genes critical for cancer stem cell (CSC) formation and maintenance, as exemplified by SOX9. The generation of CSBPs is essentially induced by the acquisition of H3K27me3 during cell state transition, which is mediated by specific binding of PRC2.1 and the de novo recruitment of PRC2.2. Notably, disrupting the bivalency of CSBPs significantly increases H3K4me3 levels, leading to hyperactivation of CSBPs and eventually inhibiting clonal expansion of CSCs and impairing tumorigenesis. Our study not only helps explain the puzzle of transcriptionally active bivalent genes in cancer but also provides insights into the development of therapies targeting phenotypic plasticity.

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Chinese Journal of New Drugs2025

Industrial Structure Transformation and Economic Growth: A Case Study of the Yangtze River Economic Belt

Authors: Zhang Wei, Li Na, Wang Fang, Chen Jing

This study investigates the relationship between industrial structure transformation and economic growth in the Yangtze River Economic Belt, a key region in China's development strategy. Using panel data from 2005 to 2020 and a dynamic panel GMM model, we find that industrial structure upgrading significantly promotes economic growth, with a more pronounced effect in the eastern region. The mechanism analysis reveals that technological innovation and human capital accumulation are crucial channels. Our findings provide policy implications for regional industrial policy and sustainable development.

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Stem Cell Research & Therapy2025

Mesenchymal stem cell therapy for end-stage liver disease: adversity and opportunity

Authors: Shiqi Li, Yichen Wang, Su-meng Li, Yaxin Zhu, Yan-qin Du, Xin Zheng, Jun Wu

End-stage liver disease (ESLD) is one of the predominant diseases contributing to high morbidity and mortality worldwide, with etiologies including alcoholic liver disease, viral hepatitis, non-alcoholic fatty liver disease, and metabolic-associated liver disease. Currently, liver transplantation remains the only effective treatment, however, its clinical application is significantly limited by donor shortages, immune rejection, and high medical costs. Among the five types of stem cells that have been experimentally applied to liver diseases, mesenchymal stem cells (MSCs) have emerged as the most extensively studied, with the largest number of experimental and clinical research platforms worldwide. This review compiles findings from 25 preclinical and clinical studies on MSCs in the treatment of ESLD, aiming to elucidate the core mechanisms of action and then outline both the challenges in MSC clinical translation and the novel opportunities arising from cutting-edge research.

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Stem Cell Research & Therapy2025

Dental pulp stem cell-derived intracellular vesicles prevent orthodontic relapse by inhibiting PI3K/Akt/NF-κB-mediated osteoclast activity

Authors: Boyuan Peng, Ziwei Li, Yong Cheng, Henghua Jiang, Qingsong Ye, Guangli Han

Background Orthodontic relapse, the undesired deviation of teeth from their corrected positions, remains a significant challenge in clinical orthodontics. Incomplete periodontal bone remodeling has been identified as a key factor in this process. Despite decades of research, currently there are no effective strategies to prevent relapse. Methods We isolated and identified dental pulp stem cell-derived intracellular vesicles (DPSC-IV) from human dental pulp tissue. To investigate its effect, DPSC-IV was added to osteoblast or osteoclast differentiation medium. During the orthodontic retention period, DPSC-IV was administrated to rats by subgingival injection. Relapse distance and relapse rate were calculated to evaluate DPSC-IV's ability to prevent relapse. Additionally, Western blot analysis were used to examine DPSC-IV's inhibitory effect on osteoclast differentiation. Results DPSC-IV significantly promoted osteoblast differentiation and inhibited osteoclast differentiation. Application of DPSC-IV during retention resulted in a significant reduction in both relapse distance and relapse rate, with improved periodontal structure and decreased osteoclast activity. This effect was mediated by the PI3K/Akt/NF-κB signaling pathway and could be reversed by the PI3K activator insulin-like growth factor-1 (IGF-1). Conclusion This study highlights the potential of DPSC-IV as a novel preventive approach against orthodontic relapse, offering a novel strategy for maintaining long-term orthodontic stability.

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Acta Biochimica et Biophysica Sinica2025

New feature of hMEIOB and hSPATA22 binding to ssDNA from a single-molecule perspective

Authors: Yating Xu, Wei Qu, Erchi Zhou, Qi Sun, Weihao Gong, Lei Xu, Yaoke Lei, Zhangying Jia, Hanqing Shi, Xinghua Zhang, Mengcheng Luo

MEIOB and SPATA22 are gonad-specific proteins that function in meiosis recombination. Mutations in these two proteins cause oligospermia or azoospermia in human males. It has been reported that the heterodimer composed of MEIOB and SPATA22 recognizes and binds to the single-strand DNA (ssDNA) protected by the replication protein A (RPA) complex to promote DNA damage repair during homologous recombination. However, the amino acid sequences of the two proteins are inconsistent in humans and rodents, which leads to functional differences in meiosis. In this study, human-derived MEIOB (hMEIOB) and SPATA22 (hSPATA22) are expressed and purified for electrophoretic mobility shift assay (EMSA), magnetic tweezer (MT) assay and bio-layer interferometry (BLI) assay to analyze the ssDNA binding patterns. The results show that hMEIOB has low ssDNA-binding affinity and stability alone, but hSPATA22 binds to ssDNA faster and more stably and promotes ssDNA condensation. Strong binding affinity and stability to ssDNA are present when the hMEIOB-hSPATA22 heterodimer is formed. Moreover, we find that multiple hMEIOB-hSPATA22 heterodimers spontaneously aggregate in vitro. hRPA complex weakens the binding affinity of hMEIOB, hSPATA22 and hMEIOB-hSPATA22 heterodimer to ssDNA, and it can also bind to hSPATA22 and hMEIOB-hSPATA22 heterodimer in vitro, which might be related to the proven function of RPA complex to protect ssDNA and recruit proteins related to DNA damage repair during meiosis. Overall, this study is the first time to elucidate the binding patterns of the hMEIOB and hSPATA22 to ssDNA in vitro, and to verify the relationship between the RPA complex and meiosis-related proteins, MEIOB and SPATA22, from single-molecule perspective.

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Acta Biochimica et Biophysica Sinica2025

Berberine alters the gut microbiota metabolism and impairs spermatogenesis

Authors: Wei Qu, Yumin Xu, Jing Yang, Hanqing Shi, Junli Wang, Xinnai Yu, Jiemin Chen, Binyi Wang, Deqing Zhuoga, Mengcheng Luo, Rong Liu

Berberine (BBR) is used to treat diarrhea clinically. However, its reproductive toxicity is unclear. This study aims to investigate the impact of BBR on the male reproductive system. Intragastric BBR administration for 14 consecutive days results in a significant decrease in the serum testosterone concentration, epididymal sperm concentration, mating rate and fecundity of male mice. Testicular treatment with testosterone propionate (TP) partially reverses the damage caused by BBR to the male reproductive system. Mechanistically, the decrease in Muribaculaceae abundance in the gut microbiota of mice is the principal cause of the BBR-induced decrease in the sperm concentration. Both fecal microbiota transplantation (FMT) and polyethylene glycol (PEG) treatment demonstrate that Muribaculaceae is necessary for spermatogenesis. The intragastric administration of Muribaculaceae intestinale to BBR-treated mice restores the sperm concentration and testosterone levels. Metabolomic analysis reveals that BBR affects arginine and proline metabolism, of which ornithine level is downregulated. Combined analysis via 16S rRNA metagenomics sequencing and metabolomics shows that Muribaculaceae regulates ornithine level. The transcriptomic results of the testes indicate that the expressions of genes related to the low-density lipoprotein receptor (LDLR)-mediated testosterone synthesis pathway decrease after BBR administration. The transcriptional activity of the Ldlr gene in TM3 cells is increased with increased ornithine supplementation in the culture media, leading to increased testosterone synthesis. Overall, this study reveals an association between a BBR-induced decrease in Muribaculaceae abundance and defective spermatogenesis, providing a prospective therapeutic approach for addressing infertility-related decreases in serum testosterone triggered by changes in the gut microbiota composition.

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Acta Biochimica et Biophysica Sinica2025

Coupling of alternative splicing and alternative polyadenylation

Authors: Xueying Zhang, Feiyan Liu, Yu Zhou

RNA splicing and 3′-cleavage and polyadenylation (CPA) are essential processes for the maturation of RNA. There have been extensive independent studies of these regulated processing events, including alternative splicing (AS) and alternative polyadenylation (APA). However, growing evidence suggests potential crosstalk between splicing and 3′-end processing in regulating AS or APA. Here, we first provide a brief overview of the molecular machines involved in splicing and 3′-end processing events, and then review recent studies on the functions and mechanisms of the crosstalk between the two processes. On the one hand, 3′-end processing can affect splicing, as 3′-end processing factors and CPA-generated polyA tail promote the splicing of the last intron. Beyond that, 3′-end processing factors can also influence the splicing of internal and terminal exons. Those 3′-end processing factors can also interact with different RNA-binding proteins (RBPs) to exert their effects on AS. The length of 3′ untranslated region (3′ UTR) can affect the splicing of upstream exons. On the other hand, splicing and CPA may compete within introns in generating different products. Furthermore, splicing within the 3′ UTR is a significant factor contributing to 3′ UTR diversity. Splicing also influences 3′-end processing through the actions of certain splicing factors. Interestingly, some classical RBPs play dual roles in both splicing and 3′-end processing. Finally, we discuss how long-read sequencing technologies aid in understanding the coordination of AS-APA events and envision that these findings may potentially promote the development of new strategies for disease diagnosis and treatment.

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Stem Cell Research & Therapy2024

Prostatic lineage differentiation from human embryonic stem cells through inducible expression of NKX3-1

Authors: Songwei Wang, Yangyang Yu, Yinglei Li, Tianzhe Zhang, Wei Jiang, Xinghuan Wang, Ran Liu

Background Understanding the lineage differentiation of human prostate not only is crucial for basic research on human developmental biology but also significantly contributes to the management of prostate-related disorders. Current knowledge mainly relies on studies on rodent models, lacking human-derived alternatives despite clinical samples may provide a snapshot at certain stage. Human embryonic stem cells can generate all the embryonic lineages including the prostate, and indeed a few studies demonstrate such possibility based on co-culture or co-transplantation with urogenital mesenchyme into mouse renal capsule. Methods To establish a stepwise protocol to obtain prostatic organoids in vitro from human embryonic stem cells, we apply chemicals and growth factors by mimicking the regulation network of transcription factors and signal transduction pathways, and construct cell lines carrying an inducible NKX3-1 expressing cassette, together with three-dimensional culture system. Unpaired t test was applied for statistical analyses. Results We first successfully generate the definitive endoderm, hindgut, and urogenital sinus cells. The embryonic stem cell-derived urogenital sinus cells express prostatic key transcription factors AR and FOXA1, but fail to express NKX3-1. Therefore, we construct NKX3-1-inducible cell line by homologous recombination, which is eventually able to yield AR, FOXA1, and NKX3-1 triple-positive urogenital prostatic lineage cells through stepwise differentiation. Finally, combined with 3D culture we successfully derive prostate-like organoids with certain structures and prostatic cell populations. Conclusions This study reveals the crucial role of NKX3-1 in prostatic differentiation and offers the inducible NKX3-1 cell line, as well as provides a stepwise differentiation protocol to generate human prostate-like organoids, which should facilitate the studies on prostate development and disease pathogenesis.

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Acta Biochimica et Biophysica Sinica2024

Macrophages exploit the mannose receptor and JAK-STAT1-MHC-II pathway to drive antigen presentation and the antimycobacterial immune response after BCG vaccination

Authors: Ying Zhang, Dandan Xu, Qi Nie, Jing Wang, Dan Fang, Yan Xie, Huang Xiong, Qin Pan, Xiao-Lian Zhang

Tuberculosis (TB), caused by Mycobacterium tuberculosis (M.tb), remains one of the leading causes of fatal infectious diseases worldwide. The only licensed vaccine, Mycobacterium bovis Bacillus Calmette-Guérin (BCG), has variable efficacy against TB in adults. Insufficiency of immune cell function diminishes the protective effects of the BCG vaccine. It is critical to clarify the mechanism underlying the antimycobacterial immune response during BCG vaccination. Macrophage mannose receptor (MR) is important for enhancing the uptake and processing of glycoconjugated antigens from pathogens for presentation to T cells, but the roles of macrophage MR in the BCG-induced immune response against M.tb are not yet clear. Here, we discover that macrophage MR deficiency impairs the antimycobacterial immune response in BCG-vaccinated mice. Mechanistically, macrophage MR triggers JAK-STAT1 signaling, which promotes antigen presentation via upregulated MHC-II and induces IL-12 production by macrophages, contributing to CD4+ T cell activation and IFN-γ production. MR deficiency in macrophages reduces the vaccine efficacy of BCG and increases susceptibility to M.tb H37Ra challenge in mice. Our results suggest that MR is critical for macrophage antigen presentation and the antimycobacterial immune response to BCG vaccination and offer valuable guidance for the preventive strategy of BCG immunization.

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Acta Biochimica et Biophysica Sinica2024

Construction of a cell-based aggregation and seeding model for the Tau protein

Authors: Jiying Hu, Liqiang Wang, Jie Chen, Yi Liang

A pathological hallmark of Alzheimer’s disease (AD), the most common neurodegenerative disease in elderly people, is the formation of neurofibrillary tangles (NFTs), which are mainly composed of bundles of amyloid fibrils formed by abnormal deposition of hyperphosphorylated full-length human Tau protein [1–3]. Recent studies have shown that AD-related cognitive decline and brain atrophy are closely correlated with Tau PET signal, further supporting the link between Tau pathology and AD symptomatology [4,5]. Despite the high incidence and severe burden to patients, caregivers, and health systems caused by AD, there are few disease-modifying therapies available. Normal functional human Tau protein binds to tubulin heterodimers through its microtubule-binding repeats and stabilizes microtubules. Hyperphosphorylated Tau detaches from microtubules and exposes the microtubule-binding domain, thereby leading to Tau self-oligomerization and aggregation [6]. Accumulating evidence suggests that filamentous Tau inclusions form first in a small number of brain cells, from which they are released and taken up by neighboring cells via endocytosis; these filamentous Tau inclusions act as templates for their own replication through monomeric Tau addition and propagate to other regions of the cells [7,8]. Propagation of neuropathology is called prion-like, which refers to the capacity of an abnormally assembled protein to induce the same pathological conformation in the same protein, initiating a self-amplifying cascade. Transcellular propagation and prion-like phenomena are thought to contribute to the progression of pathology in AD, suggesting that inhibiting Tau aggregation and seeding could slow disease progression [7,8]. Accordingly, different experimental aggregation models for the Tau protein have been developed. A cell-based model offers a physiological assay environment with controllable costs and reproducible results, making it the most widely used model for the development of Tau-targeted therapies. In most cellular models, self-assembly of naive monomeric Tau is promoted by the addition of an exogenous ‘seed’ template of synthetic or patient-derived pre-aggregated Tau [9]. Pre-prepared fibrillar seeds of Tau are added to the cell culture medium, taken up by cells, and act as templates to induce the aggregation of monomeric Tau. In addition to homotypic seeding, heterotypic seeding has also been demonstrated for Tau. Direct cross-seeding between pre-aggregated Aβ and Tau is supported by direct binding between Aβ peptides and Tau and direct induction of Tau fibrillization by pre-aggregated Aβ seeds [10]. Human-derived seeds are the most relevant source of pathological Tau protein; however, clinical material is not straightforward to obtain and work with, and it is difficult to guarantee the quality and stability of aggregated seeds. In addition, aggregate seeds could damage the integrity of the cell membrane and lead to cytotoxicity. In the present study, we reported the construction of a cell-based model for the aggregation of endogenous Tau protein in cells without pre-prepared seeds. By introducing an aggregation-driven pathological mutant, ΔK280, to the aggregation-prone truncated core fragment of Tau (Tau244‒372, K18), we constructed a stable cell line over-expressing K18-ΔK280. Over-expressed K18-ΔK280 spontaneously aggregated in SH-SY5Y cells, forming amyloid fibrils positive for thioflavin S (ThS) (Figure 1), a fluorescent dye with β-sheet binding properties, which is widely employed to observe amyloid plaque accumulation [10]. Based on the present cellular model, the properties of Tau aggregation after seeding can be further observed. The aggregates formed by K18-ΔK280 induce co-aggregation and phosphorylation of endogenous Tau in SH-SY5Y cells, which can be recognized by AT8 (phosphorylation at Ser202/Thr205) and pS396 (phosphorylation at Ser396) (Figures 2 and 3) because phosphorylation at Ser202, Thr205, and Ser396 occurred in endogenous Tau but not at K18-ΔK280. This model is easy to use and avoids the potential cytotoxicity caused by fibrillar seeds.

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Acta Biochimica et Biophysica Sinica2024

DPP3 promotes breast cancer tumorigenesis by stabilizing FASN and promoting lipid synthesis

Authors: Xiaoyu Fu, Xu Li, Weixing Wang, Juanjuan Li

DPP3, a dipeptidyl peptidase, participates in a variety of pathophysiological processes. DPP3 is upregulated in cancer and might serve as a key factor in the tumorigenesis and progression of various malignancies. However, its specific role and molecular mechanism are still unknown. In this study, the expression of DPP3 in breast cancer tissues is analyzed using TCGA database. Kaplan-Meier survival analysis is performed to estimate the effect of DPP3 on the survival outcomes. To explore the biological function and mechanisms of DPP3 in breast cancer, biochemical and cell biology assays are conducted in vitro. DPP3 expresses at a higher level in breast cancer tissues than that in adjacent tissues in both TCGA database and clinical samples. Patients with high expression of DPP3 have poor survival outcomes. The proliferation and migration abilities of tumor cells with stable DPP3 knockout in breast cancer cell lines are significantly inhibited, and apoptosis is increased in vitro. GSEA analysis shows that DPP3 can affect lipid metabolism and fatty acid synthesis in tumors. Subsequent experiments show that DPP3 could stabilize FASN expression and thus promote fatty acid synthesis in tumor cells. The results of the metabolomic analysis also confirm that DPP3 can affect the content of free fatty acids. This study demonstrates that DPP3 plays a role in the reprogramming of fatty acid metabolism in tumors and is associated with poor prognosis in breast cancer patients. These findings will provide a new therapeutic target for the treatment of breast cancer.

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