• The P124A mutation in SRP14 causes faster migration on SDS-PAGE, explaining observed variations across cell lines.
• Mutations within the alanine-rich domain (P117A, A121P) affect migration, while those outside do not.
• SRP14P124A retains functional equivalence to wild-type SRP14 in RNA stability, cell morphology, and growth.
• This natural variant highlights the importance of proline residues in protein electrophoretic behavior without compromising function.
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