• FSCN1 deficiency causes neonatal lethality due to severe hypoglycemia, which can be rescued by glucose supplementation.
• FSCN1 is essential for glycerol-driven hepatic gluconeogenesis in neonates, independent of canonical insulin-regulated pathways.
• FSCN1 loss downregulates the glycerol phosphate shuttle and reduces GPD1/GPD2 protein levels, impairing glycerol-to-glucose conversion.
• This study reveals a novel cytoskeletal-metabolic integration, highlighting FSCN1 as a potential therapeutic target for neonatal metabolic disorders.
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