• EC d4 are most vulnerable towards Dox-induced cytotoxicity independent of drug transport.
• EC d4 and EC d6 display higher levels of drug-induced DSB as compared to mESC.
• Dox treatment of EPC causes functional impairments in differentiated progeny, including mitochondrial dysfunction and barrier defects.
• Pharmacological protection of EPC from Dox damage may reduce late cardiotoxicity in anticancer regimens.
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