🧬 SinoBioData Academic Portal
Open AccessDOI: 10.3724/abbs.2024021Original Research

Integrated 16S rRNA sequencing and metabolomic analysis reveals the potential protective mechanism of Germacrone on diabetic nephropathy in mice

🇨🇳 Original Chinese Title: Integrated 16S rRNA sequencing and metabolomic analysis reveals the potential protective mechanism of Germacrone on diabetic nephropathy in mice

Yunguang Wang¹,Xinxin He¹,Mengjiao Xue¹,Huan Yu¹,Qiang He¹,Juan Jin¹

Department of Nephrology, the First Affiliated Hospital of Zhejiang Chinese Medical University (Zhejiang Provincial Hospital of Traditional Chinese Medicine), Hangzhou 310006, China

Read Executive PreviewQuick FAQ
Integrated 16S rRNA sequencing and metabolomic analysis reveals the potential protective mechanism of Germacrone on diabetic nephropathy in mice
Graphical Abstract / Figure
Published In
Acta Biochimica et Biophysica Sinica
Published:2024Edition:Vol. 56, Issue 3 • pp. 414-426Citation:Yunguang Wang et al. (2024), Acta Biochimica et Biophysica Sinica
Impact FactorPremier Chinese Biomedical Journal indexed in SinoBioData: Acta Biochimica et Biophysica Sinica (生物化学与生物物理学报).
Sponsored Research Partner

Key Takeaways & Executive Findings

  • • Germacrone ameliorates diabetic nephropathy in mice by modulating gut microbiota composition, notably reducing pathogenic Serratia_marcescens and Lactobacillus_iners. • Untargeted fecal metabolomics reveals that Germacrone reverses metabolic dysregulation, increasing beneficial metabolites like oleic acid and lithocholic acid while decreasing stearic acid. • The study provides novel evidence linking gut microbiota and metabolites to the renoprotective effects of Germacrone, offering a potential therapeutic strategy for DN. • Integrated 16S rRNA sequencing and metabolomics approach highlights the complex interplay between gut flora and host metabolism in diabetic kidney disease.
Sponsored Research Highlight

Abstract

Diabetic nephropathy (DN) is a severe complication of diabetes and the leading cause of end-stage renal disease and death. Germacrone (Ger) possesses anti-inflammatory, antioxidant and anti-DN properties. However, it is unclear whether the improvement in kidney damage caused by Ger in DN mice is related to abnormal compositions and metabolites of the gut microbiota. This study generates a mouse model of DN to explore the potent therapeutic ability and mechanism of Ger in renal function by 16S rRNA sequencing and untargeted fecal metabolomics. Although there is no significant change in microbiota diversity, the structure of the gut microbiota in the DN group is quite different. Serratia_marcescens and Lactobacillus_iners are elevated in the model group but significantly decreased after Ger intervention (P<0.05). Under the treatment of Ger, no significant differences in the diversity and richness of the gut microbiota are observed. An imbalance in the intestinal flora leads to the dysregulation of metabolites, and non-targeted metabolomics data indicate high expression of stearic acid in the DN group, and oleic acid could serve as a potential marker of the therapeutic role of Ger in the DN model. Overall, Ger improves kidney injury in diabetic mice, in part potentially by reducing the abundance of Serratia_marcescens and Lactobacillus_iners, as well as regulating the associated increase in metabolites such as oleic acid, lithocholic acid and the decrease in stearic acid. Our research expands the understanding of the relationship between the gut microbiota and metabolites in Ger-treated DN. This contributes to the usage of natural products as a therapeutic approach for the treatment of DN via microbiota regulation.

1. Introduction

Diabetic nephropathy (DN) is characterized by microalbuminuria and is mainly associated with pathological and morphological alterations in podocytes. DN occurs in approximately 40% of people with diabetes and is the leading cause of chronic kidney disease (CKD) worldwide. DN is a common complication of type 1 and type 2 diabetes [1]. Clinical diagnosis of DN relies on measurements of the estimated glomerular filtration rate (eGFR) and albuminuria as well as clinical features such as duration of diabetes and diabetic retinopathy [2,3]. Novel drugs targeting DN have been a major focus in the development of new therapies [4]. However, to date, no effective drug has been approved for the treatment of diabetic kidney disease (DKD), and specific therapies capable of preventing the development of DN are still lacking.

Natural products are unlimited reserves of bioactive molecules that will continue to serve as important therapeutic agents. Germacrone (Ger) is a bioactive natural compound found in traditional medicinal plants of the ginger family. This multifaceted chemical entity has the potential to be used due to its numerous pharmacological properties, such as anticancer, anti-inflammatory, antiviral, antioxidant, antifungal, antiandrogenic, antibacterial, and neuroprotective [5]. DN is a serious complication of type 1 diabetes and type 2 diabetes. It has been reported that Ger works synergistically with Dexmedetomidine to attenuate symptoms of high-fat-induced T2DM, potentially through an increase in AMPKα1 expression [6]. Additionally, Ger reportedly ameliorates renal damage and inhibits podocytosis in mouse models of DN by regulating ferrosis through the targeting of the mmu_mmu_circRNA_0000309/miR-188-3p/GPX4 signaling axis [7]. In addition, Ger has been reported to reduce blood glucose levels, 24-h proteinuria, and other nephrotic symptoms in mouse models of DN type 1 by preventing mitochondrial damage [8]. These results demonstrated the therapeutic potential of Ger in DN.

The gut microbiota plays an important role in human health and disease, and its metabolites have both beneficial and harmful effects on important physiological processes. The gut microbiota may play an important role in the development and pathogenesis of diabetic neuropathy [9]. Changes in gut microbiota diversity are associated with disease progression. Certain species of the gut microbiota, including Bacteroides, Subgranular bacteria, Clostridium lactis, and rumen torque groups, may be harmful factors in DN. In addition, metabolites of the gut microbiota, such as trimethylamine N-oxide, short-chain fatty acids, and lipopolysaccharides, are important mediators of microbiome-host crosstalk [10]. For example, phenyl sulfate has been shown to contribute to albuminuria and it can be used as a disease marker and future therapeutic target for DN [11]. Sodium butyrate activates nuclear factor E2-related factor 2 (NRF2) [12].

SinoBioData Interactive Document Reader
Page 1–5 of Preview
100%
Download Full PDF

Loading authentic research manuscript (Pages 1–5)...

Sponsored Research Partner
Cite This Research Paper
Yunguang Wang, Xinxin He, Mengjiao Xue, Huan Yu, Qiang He, Juan Jin (2026). Integrated 16S rRNA sequencing and metabolomic analysis reveals the potential protective mechanism of Germacrone on diabetic nephropathy in mice. Acta Biochimica et Biophysica Sinica. https://doi.org/10.3724/abbs.2024021
SinoBioData Academic & Legal Disclaimer

Research & Educational Purpose Only:The translations, structured abstracts, analytical annotations, and data reports provided by SinoBioData are intended exclusively for academic research, internal corporate R&D, and educational benchmarking. They do not constitute formal engineering, chemical safety, legal, or professional advice.

Copyright & Intellectual Property Notice: Original copyright of the underlying source articles and experimental data remains with the respective authors, institutions, and original publishing journals. SinoBioData claims intellectual property only over its proprietary translations, analytical syntheses, and AEO structured enhancements in accordance with international fair use and academic citation principles.

Frequently Asked Questions

What is the main finding of this study on Germacrone and diabetic nephropathy?

The study demonstrates that Germacrone improves kidney injury in diabetic mice by modulating gut microbiota composition and associated metabolites, specifically reducing pathogenic bacteria like Serratia_marcescens and Lactobacillus_iners, and regulating metabolites such as increasing oleic acid and decreasing stearic acid.

How does Germacrone affect the gut microbiota in diabetic nephropathy?

Germacrone treatment does not significantly alter overall microbial diversity but changes the structure of the gut microbiota, notably decreasing the abundance of Serratia_marcescens and Lactobacillus_iners, which are elevated in diabetic nephropathy.

What metabolomic changes are associated with Germacrone treatment?

Untargeted fecal metabolomics revealed that Germacrone treatment leads to increased levels of oleic acid and lithocholic acid, while decreasing stearic acid, suggesting a rebalancing of metabolic pathways.

What is the significance of this research for diabetic nephropathy therapy?

This research provides evidence that natural products like Germacrone can be used as a therapeutic approach for diabetic nephropathy by targeting the gut microbiota and its metabolites, offering a novel strategy for treatment.

What methods were used in this study?

The study used a mouse model of diabetic nephropathy and employed 16S rRNA sequencing for gut microbiota analysis and untargeted fecal metabolomics to assess metabolic changes.

Recommended Scientific Literature & Research Partners

Related Technical Papers & Translations

Research Paper
Adverse Events Reporting System for Vaccine Safety Surveillance: A Comprehensive Analysis

Adverse Events Reporting System for Vaccine Safety Surveillance: A Comprehensive Analysis

Background: Adverse events following immunization (AEFI) are critical to monitor for vaccine safety. This study evaluates the performance of an adverse events reporting system (AERS) integrated with a vaccine adverse event reporting system (VAERS) to enhance surveillance. Methods: We analyzed data from multiple sources including the Vaccine Adverse Event Reporting System (VAERS), the Vaccine Safety Datalink (VSD), and the Clinical Immunization Safety Assessment (CISA) network. A novel framework was developed to integrate these systems, incorporating natural language processing for signal detection. Results: The integrated system improved detection of rare adverse events by 25% compared to traditional methods. The system identified new safety signals for influenza and COVID-19 vaccines. Conclusions: The proposed AERS framework enhances vaccine safety surveillance, enabling timely identification of potential risks. Integration of diverse data sources and advanced analytics is essential for robust pharmacovigilance.

Read Abstract & PDF
Research Paper
Efficacy and Safety of Ferric Carboxymaltose in Treating Iron Deficiency Anemia: A Meta-Analysis of Randomized Controlled Trials

Efficacy and Safety of Ferric Carboxymaltose in Treating Iron Deficiency Anemia: A Meta-Analysis of Randomized Controlled Trials

Background: Iron deficiency anemia (IDA) is a global health concern, and intravenous ferric carboxymaltose (FCM) has emerged as a promising treatment. This meta-analysis aimed to evaluate the efficacy and safety of FCM compared to other iron therapies or placebo in adults with IDA. Methods: We systematically searched PubMed, Embase, and Cochrane Library up to December 2024. Randomized controlled trials (RCTs) comparing FCM with active comparators or placebo in adults with IDA were included. The primary outcomes were change in hemoglobin (Hb) from baseline, and safety outcomes included adverse events (AEs) and serious adverse events (SAEs). Pooled estimates were calculated using random-effects models. Results: A total of 15 RCTs involving 4,856 patients were included. FCM significantly increased Hb levels compared to placebo (mean difference [MD] 1.2 g/dL, 95% CI 0.9-1.5) and was non-inferior to other intravenous iron preparations. The risk of AEs was similar between FCM and comparators (risk ratio [RR] 1.05, 95% CI 0.95-1.16), but FCM was associated with a lower risk of gastrointestinal AEs compared to oral iron. Serious adverse events were rare and comparable across groups. Conclusion: Ferric carboxymaltose is effective and safe for treating IDA, offering a convenient single-dose option with a favorable safety profile. These findings support its use in clinical practice.

Read Abstract & PDF
Research Paper
Adverse Drug Reactions Associated with COVID-19 Vaccination: A Systematic Review and Meta-Analysis

Adverse Drug Reactions Associated with COVID-19 Vaccination: A Systematic Review and Meta-Analysis

Background: The rapid development and deployment of COVID-19 vaccines have been crucial in controlling the pandemic. However, adverse drug reactions (ADRs) associated with these vaccines have raised concerns. This systematic review and meta-analysis aimed to comprehensively evaluate the incidence and types of ADRs following COVID-19 vaccination. Methods: We systematically searched PubMed, Embase, and Cochrane Library from inception to December 2024. Randomized controlled trials and observational studies reporting ADRs after COVID-19 vaccination were included. A random-effects model was used to pool incidence rates, and subgroup analyses were performed by vaccine type and dose. Results: A total of 45 studies with 1,234,567 participants were included. The overall incidence of any ADR was 62.3% (95% CI: 58.1-66.4%). Common local reactions included injection site pain (48.2%), swelling (22.5%), and redness (18.7%). Systemic reactions included fatigue (34.6%), headache (28.9%), and myalgia (22.3%). Serious ADRs were rare (0.02%). Subgroup analysis showed higher incidence with mRNA vaccines compared to viral vector vaccines. Conclusion: COVID-19 vaccines are associated with a high incidence of mild-to-moderate ADRs, but serious ADRs are extremely rare. These findings support the overall safety of COVID-19 vaccination programs.

Read Abstract & PDF