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Open AccessDOI: 10.3724/abbs.2025167Original Research

Genetic characterization and functional analysis of novel PITX2 variants identified in Chinese families with Axenfeld-Rieger syndrome

🇨🇳 Original Chinese Title: Genetic characterization and functional analysis of novel PITX2 variants identified in Chinese families with Axenfeld-Rieger syndrome

Junqin Xu¹,Xinyao Wang¹,Zilin Zhong¹,Jianjun Chen¹,Peng Yang¹

Tongji University

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Genetic characterization and functional analysis of novel PITX2 variants identified in Chinese families with Axenfeld-Rieger syndrome
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Acta Biochimica et Biophysica Sinica
Published:2026Edition:Vol. 58, Issue 5 • pp. 1179-1182Citation:Junqin Xu et al. (2026), Acta Biochimica et Biophysica Sinica
Impact FactorPremier Chinese Biomedical Journal indexed in SinoBioData: Acta Biochimica et Biophysica Sinica (生物化学与生物物理学报).
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Key Takeaways & Executive Findings

  • • Identified four novel PITX2 variants in Chinese ARS families, including two frameshift, one nonsense, and one splice-site mutation. • All variants co-segregated with the disease phenotype in an autosomal dominant pattern, with two occurring de novo. • The variants are absent from population databases, confirming their rarity and likely pathogenicity. • This study expands the mutational spectrum of PITX2 and provides a basis for genetic counseling and functional studies.
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Abstract

Axenfeld-Rieger syndrome (ARS) is a rare genetic disorder characterized by anterior segment dysgenesis and systemic features. PITX2 variants are a major cause. In this study, we recruited four unrelated Chinese families with ARS and performed Sanger sequencing of PITX2. We identified four heterozygous variants: c.118delA (p.Arg40Glyfs*115), c.211G>T (p.Glu71X), c.253-1G>T, and c.663_670dupGACTCCTC (p.Pro224Argfs*18). These variants co-segregated with the phenotype in an autosomal dominant pattern, with two arising de novo. All variants were absent from ExAC and gnomAD, indicating rarity. Our findings expand the mutation spectrum of PITX2 and provide insights into the molecular mechanisms of ARS.

1. Introduction

Axenfeld-Rieger syndrome (ARS), initially characterized by Theodor Axenfeld and Herwigh Rieger in the early 20th century [1], is a rare genetic disorder with an estimated prevalence of 1:200,000 in live births [2]. This condition is characterized by distinctive anterior segment dysgenesis, including iris stromal hypoplasia, corectopia, and posterior embryotoxon. It is also accompanied by characteristic systemic features such as craniofacial dysmorphism, dental anomalies, cardiovascular malformations, and periumbilical skin redundancy [3,4].

Genetically, ARS is highly heterogeneous, with pathogenic variants identified in several genes. Among these, PITX2 on chromosome 4q25 [5] and FOXC1 on chromosome 6p25 [6] are the most frequently implicated. In particular, PITX2 is a transcription factor harboring a highly conserved homeobox domain, which regulates the transcription of downstream targets essential for ocular, dental, cardiac, and umbilical development [7,8]. Variants in PITX2 may alter protein localization or impair its transcriptional activity, thereby disrupting normal developmental processes and leading to the characteristic phenotypes of ARS [9,10].

Despite its clinical and genetic significance, ARS is thought to be underdiagnosed, and most studies on PITX2-related ARSs remain limited to individual case reports. In the present study, we aimed to delineate the genetic spectrum of ARS in Chinese patients and to elucidate the molecular mechanisms underlying the pathogenesis associated with PITX2 variants.

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Cite This Research Paper
Junqin Xu, Xinyao Wang, Zilin Zhong, Jianjun Chen, Peng Yang (2026). Genetic characterization and functional analysis of novel PITX2 variants identified in Chinese families with Axenfeld-Rieger syndrome. Acta Biochimica et Biophysica Sinica. https://doi.org/10.3724/abbs.2025167
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Frequently Asked Questions

What is Axenfeld-Rieger syndrome?

Axenfeld-Rieger syndrome (ARS) is a rare genetic disorder characterized by anterior segment dysgenesis of the eye, along with systemic features such as craniofacial, dental, cardiac, and umbilical anomalies. It is caused by mutations in genes like PITX2 and FOXC1.

What novel PITX2 variants were identified in this study?

The study identified four novel PITX2 variants in Chinese ARS families: c.118delA (p.Arg40Glyfs*115), c.211G>T (p.Glu71X), c.253-1G>T, and c.663_670dupGACTCCTC (p.Pro224Argfs*18). These include frameshift, nonsense, and splice-site mutations.

How were the PITX2 variants identified?

Genomic DNA was extracted from blood samples of probands and family members. Specific primers for PITX2 were designed, and PCR products were analyzed by Sanger sequencing to detect variants.

What is the inheritance pattern of the identified variants?

The variants co-segregated with the disease phenotype in an autosomal dominant pattern, affecting both males and females. Two of the variants arose de novo, indicating sporadic cases.

Why are these findings significant?

These findings expand the mutation spectrum of PITX2 in ARS, provide insights into the molecular mechanisms, and have implications for genetic counseling and diagnosis of ARS in Chinese populations.

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